BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons, BMC Genomics, vol.12, p.402, 2011. ,
Disperse abroad in the land": The role of wildlife in the dissemination of antimicrobial resistance, Biol. Lett, vol.12, p.20160137, 2016. ,
The RAST Server: rapid annotations using subsystems technology, BMC Genomics, vol.9, p.75, 2008. ,
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing, J. Comput. Biol, vol.19, pp.455-477, 2012. ,
First case of NDM-1 producing Klebsiella pneumoniae in Caribbean islands, Int. J. Infect. Dis, vol.34, pp.53-54, 2015. ,
Antibiotic resistance in wild birds, UPS. J. Med. Sci, vol.119, pp.113-116, 2014. ,
Emergence of OXA-48-producing Escherichia coli in the Caribbean islands, J. Glob. Antimicrob. Resist, vol.3, pp.217-218, 2015. ,
Contemporary IncI1 plasmids involved in the transmission and spread of antimicrobial resistance in Enterobacteriaceae, 2018. ,
In Silico detection and typing of plasmids using plasmidfinder and plasmid multilocus sequence typing, Antimicrob. Agents Chemother, vol.58, pp.3895-3903, 2014. ,
AlienTrimmer removes adapter oligonucleotides with high sensitivity in short-insert paired-end reads, Commentary on Turner, vol.5, p.130, 2014. ,
Mauve: multiple alignment of conserved genomic sequence with rearrangements, Genome Res, vol.14, pp.1394-1403, 2004. ,
West Indian mammals. the old, the new and the recently extinct, Bones, Clones and Biomes. The History and Geography of Recent Neotropical Mammals, pp.157-202, 2012. ,
Extended-spectrum beta-lactamase-producing Escherichia coli in human-derived and foodchain-derived samples from England, Wales, and Scotland: an epidemiological surveillance and typing study, Lancet Infect. Dis, vol.19, pp.1325-1335, 2019. ,
Plasmid-mediated resistance is going wild, Plasmid, vol.99, pp.99-111, 2018. ,
The IncI1 plasmid carrying the bla CTX-M-1 gene persists in in vitro culture of a Escherichia coli strain from broilers, BMC Microbiol, vol.14, p.77, 2014. ,
Wild small mammals as sentinels for the environmental transmission of antimicrobial resistance, Environ. Res, vol.154, pp.28-34, 2017. ,
PLSDB: a resource of complete bacterial plasmids, Nucleic Acids Res, vol.47, pp.195-202, 2018. ,
Modes de vie des Précolombiens des Antilles françaises. Les Nouv. l'archéologie 108/109, pp.91-101, 2007. ,
Comparable high rates of extended-spectrum-beta-lactamaseproducing Escherichia coli in birds of prey from germany and mongolia, PLoS One, vol.7, p.53039, 2012. ,
Is Fecal Carriage of Extended-Spectrum-?-Lactamase-Producing Escherichia coli in Urban Rats a Risk for Public Health?, Antimicrob. Agents Chemother, vol.57, pp.2424-2425, 2013. ,
QUAST: Quality assessment tool for genome assemblies, Bioinformatics, vol.29, pp.1072-1075, 2013. ,
Resistance to antimicrobial drugs in different surface waters and wastewaters of Guadeloupe, PLoS One, vol.12, p.173155, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01485327
Temporal trends and risks factors for antimicrobial resistant Enterobacteriaceae urinary isolates from outpatients in Guadeloupe, BMC Microbiol, vol.16, p.121, 2016. ,
URL : https://hal.archives-ouvertes.fr/pasteur-01351191
Clinically relevant antimicrobial resistance at the wildlifelivestock-human interface in Nairobi: an epidemiological study, Lancet Planet. Heal, vol.3, issue.19, p.30083, 2019. ,
Antibiotic resistance-the need for global solutions, Lancet Infect. Dis, vol.13, pp.1057-1098, 2013. ,
Interactive Tree Of Life (iTOL) v4: recent updates and new developments, Nucleic Acids Res, vol.47, pp.256-259, 2019. ,
The population biology of bacterial plasmids: a priori conditions for the existence of mobilizable nonconjugative factors, Genetics, vol.94, pp.425-443, 1980. ,
Les mammifères terrestres non volants des antilles Françaises et l'introduction récente d'un écureuil, Rev. Ecol, vol.62, pp.295-314, 2007. ,
Multidrug-resistant, extensively drug-resistant and pandrug-resistant bacteria: an international expert proposal for interim standard definitions for acquired resistance, Clin. Microbiol. Infect, vol.18, pp.268-281, 2012. ,
Global extraintestinal pathogenic Escherichia coli (ExPEC) Lineages, Clin. Microbiol. Rev, vol.32, pp.1-25, 2019. ,
Molecular characterization of addiction systems of plasmids encoding extended-spectrum ?-lactamases in Escherichia coli, J. Antimicrob. Chemother, vol.65, pp.1599-1603, 2010. ,
Efficient inference of recent and ancestral recombination within bacterial populations, Mol. Biol. Evol, vol.34, pp.1167-1182, 2017. ,
Mash Screen: high-throughput sequence containment estimation for genome discovery, Bioinformatics, vol.20, pp.3691-3693, 2015. ,
Extended-Spectrum ?-Lactamase-Producing Enterobacteriaceae: update on molecular epidemiology and treatment options, Drugs, vol.79, pp.1529-1541, 2019. ,
Genetic Detection of Extended-Spectrum -Lactamase-Containing Escherichia coli isolates from birds of prey from serra da estrela natural reserve in portugal, Appl. Environ. Microbiol, vol.76, pp.4118-4120, 2010. ,
Conservation status of Lesser Antillean reptiles, Iguana, vol.12, pp.62-77, 2005. ,
Antibiotic resistance in faecal bacteria (Escherichia coli, Enterococcus spp.) in feral pigeons, J. Appl. Microbiol, vol.109, pp.1687-1695, 2010. ,
Antibiotic-Resistant Escherichia coli in migratory birds inhabiting remote Alaska, Ecohealth, vol.15, pp.72-81, 2018. ,
Types and prevalence of extendedspectrum beta-lactamase producing Enterobacteriaceae in poultry, Anim. Heal. Res. Rev, vol.18, pp.46-57, 2017. ,
Detection of conjugative R plasmids conferring chloramphenicol resistance in Escherichia coli isolated from domestic and feral pigeons and crows, Zentralbl. Bakteriol. Orig. A, pp.407-417, 1978. ,
Prokka: rapid prokaryotic genome annotation, Bioinformatics, vol.30, pp.2068-2069, 2014. ,
Comité de l'antibiogramme de la Société Française de Microbiologie: Recommandations, 2014. ,
Role of wild birds as carriers of multidrug resistant Escherichia coli and Escherichia vulneris, Braz. J. Microbiol, vol.45, pp.1199-1209, 2014. ,
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies, Bioinformatics, vol.30, pp.1312-1313, 2014. ,
IncI1 ST3 and IncI1 ST7 plasmids from CTX-M-1-producing Escherichia coli obtained from patients with bloodstream infections are closely related to plasmids from E. coli of animal origin, J. Antimicrob. Chemother, vol.74, pp.2171-2175, 2019. ,
Characteristics of cefotaxime-resistant Escherichia coli from wild birds in The Netherlands, Appl. Environ. Microbiol, vol.79, pp.7556-7561, 2013. ,
Epidemiology of Campylobacter, Salmonella and antimicrobial resistant Escherichia coli in free-living Canada geese (Branta canadensis) from three sources in southern Ontario, Zoonoses Public Health, vol.65, pp.873-886, 2018. ,
The role of wildlife (wild birds) in the global transmission of antimicrobial resistance genes, Zool. Res, vol.38, pp.55-80, 2017. ,
Carriage of antibiotic-resistant enteric bacteria varies among sites in Galapagos reptiles, J. Wildl. Dis, vol.48, pp.56-67, 2012. ,
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads, PLoS Comput. Biol, vol.13, p.1005595, 2017. ,
Identification of acquired antimicrobial resistance genes, J. Antimicrob. Chemother, vol.67, pp.2640-2644, 2012. ,