R. Acuna-soto, D. W. Stahle, M. K. Cleaveland, and M. D. , Megadrought and Megadeath in 16th Century Mexico, Emerging Infectious Diseases, vol.8, issue.4, pp.360-362, 2002.
DOI : 10.3201/eid0804.010175

J. W. Dale, D. Brittain, A. A. Cataldi, D. Cousins, J. T. Crawford et al., Spacer oligonucleotide typing of bacteria of the Mycobacterium tuberculosis complex: recommendations for standardised nomenclature, Int. J. Tuber. Lung Dis, vol.5, pp.216-219, 2001.

J. T. Douglas, L. Qian, J. C. Montoya, J. M. Musser, J. D. Van-embden et al., Characterization of the Manila Family of Mycobacterium tuberculosis, Journal of Clinical Microbiology, vol.41, issue.6, pp.2723-2726, 2003.
DOI : 10.1128/JCM.41.6.2723-2726.2003

J. R. Driscoll, Spoligotyping for Molecular Epidemiology of the Mycobacterium tuberculosis Complex, Methods Mol. Biol, vol.551, pp.117-128, 2009.
DOI : 10.1007/978-1-60327-999-4_10

I. Filliol, A. S. Motiwala, M. Cavatore, W. Qi, M. H. Hazbón et al., Global Phylogeny of Mycobacterium tuberculosis Based on Single Nucleotide Polymorphism (SNP) Analysis: Insights into Tuberculosis Evolution, Phylogenetic Accuracy of Other DNA Fingerprinting Systems, and Recommendations for a Minimal Standard SNP Set, Journal of Bacteriology, vol.188, issue.2, pp.759-772, 2006.
DOI : 10.1128/JB.188.2.759-772.2006

D. Garcia-de-viedma, E. Bouza, N. Rastogi, and C. Sola, Analysis of Mycobacterium tuberculosis Genotypes in Madrid and Identification of Two New Families Specific to Spain-Related Settings, Journal of Clinical Microbiology, vol.43, issue.4, pp.1797-1806, 2005.
DOI : 10.1128/JCM.43.4.1797-1806.2005

D. García-de-viedma, M. S. Díaz-infantes, F. Lasala, F. Chaves, L. Alcalá et al., New Real-Time PCR Able To Detect in a Single Tube Multiple Rifampin Resistance Mutations and High-Level Isoniazid Resistance Mutations in Mycobacterium tuberculosis, Journal of Clinical Microbiology, vol.40, issue.3, pp.988-995, 2002.
DOI : 10.1128/JCM.40.3.988-995.2002

J. Kamerbeek, L. Schouls, A. Kolk, M. Van-agterveld, D. Van-soolingen et al., Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology, J. Clin. Microbiol, vol.35, pp.907-914, 1997.

A. Martinez-gamboa, A. Ponce-de-leon, A. Galindo-fraga, M. Bobadilladel-valle, M. Kato-maeda et al., Molecular Analysis of Mycobacterium tuberculosis Strains with an Intact pks15/1 Gene in a Rural Community of Mexico, Archives of Medical Research, vol.39, issue.8, pp.809-814, 2008.
DOI : 10.1016/j.arcmed.2008.08.006

M. Monot, N. Honoré, T. Garnier, R. Araoz, J. Y. Coppée et al., On the Origin of Leprosy, Science, vol.308, issue.5724, pp.1040-1042, 2005.
DOI : 10.1126/science/1109759
URL : https://hal.archives-ouvertes.fr/pasteur-00204117

T. N. Quitugua, B. J. Seaworth, S. E. Weis, J. P. Taylor, J. S. Gillette et al., Transmission of Drug-Resistant Tuberculosis in Texas and Mexico, Journal of Clinical Microbiology, vol.40, issue.8, pp.2716-2724, 2002.
DOI : 10.1128/JCM.40.8.2716-2724.2002

S. V. Ramaswamy, S. J. Dou, A. Rendon, Z. Yang, M. D. Cave et al., Genotypic analysis of multidrug-resistant Mycobacterium tuberculosis isolates from Monterrey, Mexico, Journal of Medical Microbiology, vol.53, issue.2, pp.107-113, 2004.
DOI : 10.1099/jmm.0.05343-0

. Behr, Major Mycobacterium tuberculosis lineages associate with patient country of origin, J. Clin. Microbiol, vol.47, pp.1119-1128, 2009.

V. Ritacco, B. López, P. I. Cafrune, L. Ferrazoli, P. N. Suffys et al., Mycobacterium tuberculosis strains of the Beijing genotype are rarely observed in tuberculosis patients in South America, Mem??rias do Instituto Oswaldo Cruz, vol.103, issue.5, pp.489-492, 2008.
DOI : 10.1590/S0074-02762008000500014

H. Soini, X. Pan, A. Amin, E. A. Graviss, A. Siddiqui et al., Characterization of Mycobacterium tuberculosis isolates from patients in Houston, Texas, by spoligotyping, J. Clin. Microbiol, vol.38, pp.669-676, 2000.

H. Soini, X. Pan, L. Teeter, J. M. Musser, and E. A. Graviss, Transmission Dynamics and Molecular Characterization of Mycobacterium tuberculosis Isolates with Low Copy Numbers of IS6110, Journal of Clinical Microbiology, vol.39, issue.1, pp.217-221, 2001.
DOI : 10.1128/JCM.39.1.217-221.2001

H. Sotomayor, J. Burgos, and M. Arango, Demostraci??n de tuberculosis en una momia prehisp??nica colombiana por la ribotipificaci??n del ADN de Mycobacterium tuberculosis., Biom??dica, vol.24, issue.0, pp.18-26, 2004.
DOI : 10.7705/biomedica.v24iSupp1.1298

R. Stavrum, M. Mphahlele, K. Ovreås, T. Muthivhi, P. B. Fourie et al., High Diversity of Mycobacterium tuberculosis Genotypes in South Africa and Preponderance of Mixed Infections among ST53 Isolates, Journal of Clinical Microbiology, vol.47, issue.6, pp.1848-1856, 2009.
DOI : 10.1128/JCM.02167-08

A. Telenti, N. Honore, C. Bernasconi, J. March, A. Ortega et al., Genotypic assessment of isoniazid and rifampin resistance in Mycobacterium tuberculosis: a blind study at reference laboratory level, J. Clin. Microbiol, vol.35, pp.719-723, 1997.

J. D. Van-embden, E. Cave, J. T. Crawford, J. W. Dale, K. D. Eisenach et al., Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: recommendation for a standardized methodology, J. Clin. Microbiol, vol.31, pp.406-409, 1993.

J. M. Viader-salvadó, C. M. Luna-aguirre, J. M. Reyes-ruiz, R. Valdez-leal, L. Del-bosque-moncayo-mde et al., Isolates from Northeast Mexico, Microbial Drug Resistance, vol.9, issue.1, pp.33-38, 2003.
DOI : 10.1089/107662903764736328

R. M. Warren, T. C. Victor, E. M. Streicher, M. Richardson, G. D. Van-der-spuy et al., Clonal Expansion of a Globally Disseminated Lineage of Mycobacterium tuberculosis with Low IS6110 Copy Numbers, Journal of Clinical Microbiology, vol.42, issue.12, pp.5774-5782, 2004.
DOI : 10.1128/JCM.42.12.5774-5782.2004

A. K. Wilbur and J. E. Buikstra, Patterns of tuberculosis in the Americas: how can modern biomedicine inform the ancient past?, Mem??rias do Instituto Oswaldo Cruz, vol.101, pp.59-66, 2006.
DOI : 10.1590/S0074-02762006001000011