A. Atkins, J. F. Wellehan, . Jr, A. L. Childress, L. L. Archer et al., Characterization of an outbreak of astroviral diarrhea in a group of cheetahs (Acinonyx jubatus), Veterinary Microbiology, vol.136, issue.1-2, pp.160-165, 2009.
DOI : 10.1016/j.vetmic.2008.10.035

D. K. Chu, J. S. Peiris, H. Chen, Y. Guan, and L. L. Poon, Genomic characterizations of bat coronaviruses (1A, 1B and HKU8) and evidence for co-infections in Miniopterus bats, Journal of General Virology, vol.89, issue.5, pp.1282-1287, 2008.
DOI : 10.1099/vir.0.83605-0

URL : https://hal.archives-ouvertes.fr/pasteur-00588960

D. K. Chu, L. L. Poon, Y. Guan, and J. S. Peiris, Novel Astroviruses in Insectivorous Bats, Journal of Virology, vol.82, issue.18, pp.9107-9114, 2008.
DOI : 10.1128/JVI.00857-08

URL : https://hal.archives-ouvertes.fr/pasteur-00588955

A. J. Drummond and A. Rambaut, BEAST: Bayesian evolutionary analysis by sampling trees, BMC Evolutionary Biology, vol.7, issue.1, p.214, 2007.
DOI : 10.1186/1471-2148-7-214

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2247476

D. Wang, Metagenomic analysis of human diarrhea: viral detection and discovery, PLoS Pathog, vol.4, 2008.

S. R. Finkbeiner, C. D. Kirkwood, and D. Wang, Complete genome sequence of a highly divergent astrovirus isolated from a child with acute diarrhea, Virology Journal, vol.5, issue.1, 2008.
DOI : 10.1093/nar/gkj149

S. R. Finkbeiner, L. R. Holtz, Y. Jiang, P. Rajendran, C. J. Franz et al., Human stool contains a previously unrecognized diversity of novel astroviruses, Virology Journal, vol.6, issue.1, p.161, 2009.
DOI : 10.1186/1743-422X-6-161

S. R. Finkbeiner, B. M. Le, L. R. Holtz, G. A. Storch, and D. Wang, Detection of Newly Described Astrovirus MLB1 in Stool Samples from Children, Emerging Infectious Diseases, vol.15, issue.3, pp.441-444, 2009.
DOI : 10.3201/1503.081213

S. Z. Zaidi and E. Delwart, Multiple novel astrovirus species in human stool, J Gen Virol, vol.90, pp.2965-2972, 2009.

K. S. Lole, R. C. Bollinger, R. S. Paranjape, D. Gadkari, S. S. Kulkarni et al., Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination, J Virol, vol.73, pp.152-160, 1999.

D. P. Martin, C. Williamson, and D. Posada, RDP2: recombination detection and analysis from sequence alignments, Bioinformatics, vol.21, issue.2, pp.260-262, 2005.
DOI : 10.1093/bioinformatics/bth490

E. Mendez and C. F. Arias, Astroviruses, Fields Virology, pp.981-1000, 2007.

S. S. Morse, Factors in the Emergence of Infectious Diseases, Emerging Infectious Diseases, vol.1, issue.1, pp.7-15, 1995.
DOI : 10.3201/eid0101.950102

S. L. Pond and S. D. Frost, A Genetic Algorithm Approach to Detecting Lineage-Specific Variation in Selection Pressure, Molecular Biology and Evolution, vol.22, issue.3, pp.478-485, 2005.
DOI : 10.1093/molbev/msi031

J. F. Wellehan and . Jr, Characterization of phylogenetically diverse astroviruses of marine mammals, J Gen Virol, vol.91, pp.166-173, 2010.

R. Sullivan, Rats: Observations on the History and Habitat of the City's Most Unwanted Inhabitants, 2003.

H. C. Zhu, D. K. Chu, W. Liu, B. Q. Dong, S. Y. Zhang et al., Detection of diverse astroviruses from bats in China, Journal of General Virology, vol.90, issue.4, pp.883-887, 2009.
DOI : 10.1099/vir.0.007732-0

URL : https://hal.archives-ouvertes.fr/pasteur-00588946