transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences, BMC Bioinformatics, vol.6, issue.156, 2005. ,
Novel Astroviruses in Insectivorous Bats, Journal of Virology, vol.82, issue.18, pp.9107-9114, 2008. ,
DOI : 10.1128/JVI.00857-08
URL : https://hal.archives-ouvertes.fr/pasteur-00588955
Viral evolution and the emergence of SARS coronavirus, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.359, issue.1447, pp.1059-1065, 2004. ,
DOI : 10.1098/rstb.2004.1478
MRBAYES: Bayesian inference of phylogenetic trees, Bioinformatics, vol.17, issue.8, pp.754-755, 2001. ,
DOI : 10.1093/bioinformatics/17.8.754
Automated Phylogenetic Detection of Recombination Using a Genetic Algorithm, Molecular Biology and Evolution, vol.23, issue.10, pp.1891-1901, 2006. ,
DOI : 10.1093/molbev/msl051
Astroviruses, Fields Virology, pp.981-1000, 2007. ,
The population genetics and evolutionary epidemiology of RNA viruses, Nature Reviews Microbiology, vol.13, issue.4, pp.279-288, 2004. ,
DOI : 10.1086/367965
MODELTEST: testing the model of DNA substitution, Bioinformatics, vol.14, issue.9, pp.817-818, 1998. ,
DOI : 10.1093/bioinformatics/14.9.817
Astrovirus: A Cause of an Enteric Disease in Turkey Poults, Avian Diseases, vol.30, issue.4, pp.728-735, 1986. ,
DOI : 10.2307/1590577
Cytopathic astrovirus isolated from porcine acute gastroenteritis in an established cell line derived from porcine embryonic kidney, J Clin Microbiol, vol.28, pp.201-206, 1990. ,
Detection and transmission of 30 nm virus particles (astroviruses) in faeces of lambs with diarrhoea, Archives of Virology, vol.129, issue.4, pp.287-291, 1977. ,
DOI : 10.1007/BF01315050
Genomic Analysis of Closely Related Astroviruses, Journal of Virology, vol.82, issue.10, pp.5099-5103, 2008. ,
DOI : 10.1128/JVI.01993-07
Prevalence and Genetic Diversity of Coronaviruses in Bats from China, Liu, W. & other authors, pp.7481-7490, 2006. ,
DOI : 10.1128/JVI.00697-06
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice, Nucleic Acids Research, vol.22, issue.22, pp.4673-4680, 1994. ,
DOI : 10.1093/nar/22.22.4673
Evolutionary insights into the ecology of coronaviruses, J Virol, vol.81, pp.4012-4020, 2007. ,
Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion, 2006. ,