Translational selection and molecular evolution, Current Opinion in Genetics & Development, vol.8, issue.6, pp.688-693, 1998. ,
DOI : 10.1016/S0959-437X(98)80038-5
Protein Oxidation in Aging, Disease, and Oxidative Stress, Journal of Biological Chemistry, vol.272, issue.33, pp.20313-20316, 1997. ,
DOI : 10.1074/jbc.272.33.20313
Reactive species and their accumulation on radical-damaged proteins, Trends in Biochemical Sciences, vol.18, issue.11, pp.437-441, 1993. ,
DOI : 10.1016/0968-0004(93)90145-D
Gene Expression, Amino Acid Conservation, and Hydrophobicity Are the Main Factors Shaping Codon Preferences in Mycobacterium tuberculosis and Mycobacterium leprae, Journal of Molecular Evolution, vol.50, issue.1, pp.45-55, 2000. ,
DOI : 10.1007/s002399910006
Trends of Amino Acid Usage in the Proteins from the Unicellular Parasite Giardia lamblia, Biochemical and Biophysical Research Communications, vol.279, issue.3, pp.996-1000, 2000. ,
DOI : 10.1006/bbrc.2000.4051
Theory and applications of correspondence analysis, 1984. ,
Systematic base composition variation around the genome of Mycoplasma genitalium, but not Mycoplasma pneumoniae, Mol Microbiol, vol.125, pp.1177-1179, 1997. ,
Proteome composition and codon usage in spirochaetes: species-specific and DNA strand-specific mutational biases, Nucleic Acids Research, vol.27, issue.7, pp.1642-1649, 1999. ,
DOI : 10.1093/nar/27.7.1642
URL : https://hal.archives-ouvertes.fr/hal-00412912
Absence of translationally selected synonymous codon usage bias in Helicobacter pylori, Microbiology, vol.146, issue.4, pp.851-860, 2000. ,
DOI : 10.1099/00221287-146-4-851
URL : https://hal.archives-ouvertes.fr/hal-00412908
Hydrophobicity, expressivity and aromaticity are the major trends of amino-acid usage in 999 Escherichia coli chromosome-encoded genes, Nucleic Acids Research, vol.22, issue.15, pp.3174-3180, 1994. ,
DOI : 10.1093/nar/22.15.3174
URL : https://hal.archives-ouvertes.fr/hal-00698020
Evolutionary genomics: Thermotoga heats up lateral gene transfer, Current Biology, vol.9, issue.19, pp.747-751, 1999. ,
DOI : 10.1016/S0960-9822(99)80474-6
URL : http://doi.org/10.1016/s0960-9822(99)80474-6
Origin of replication of Thermotoga maritima, Trends in Genetics, vol.16, issue.2, pp.59-60, 2000. ,
DOI : 10.1016/S0168-9525(99)01894-6
Prokaryotic Genome Evolution as Assessed by Multivariate Analysis of Codon Usage Patterns, Microbial & Comparative Genomics, vol.2, issue.1, pp.1-10, 1997. ,
DOI : 10.1089/omi.1.1997.2.89
Replicational and transcriptional selection on codon usage in Borrelia burgdorferi, Proceedings of the National Academy of Sciences, vol.95, issue.18, pp.10698-10703, 1998. ,
DOI : 10.1073/pnas.95.18.10698
Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima, Nature, vol.399, pp.323-329, 1999. ,
Codon usage in Chlamydia trachomatis is the result of strand-specific mutational biases and a complex pattern of selective forces, Nucleic Acids Research, vol.28, issue.10, pp.2084-2090, 2000. ,
DOI : 10.1093/nar/28.10.2084
The genome sequence of the thermoacidophilic scavenger Thermoplasma acidophilum, Nature, vol.407, pp.508-513, 2000. ,
The codon adaptation index-a measure of directional synonymous codon usage bias, and its potential applications, Nucleic Acids Research, vol.15, issue.3, pp.1281-1295, 1987. ,
DOI : 10.1093/nar/15.3.1281
Codon usage in yeast: cluster analysis clearly differentiates highly and lowly expressed genes, Nucleic Acids Research, vol.14, issue.13, pp.5125-5143, 1986. ,
DOI : 10.1093/nar/14.13.5125
DNA Sequence Evolution: The Sounds of Silence, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.349, issue.1329, pp.241-247, 1995. ,
DOI : 10.1098/rstb.1995.0108
Phylogenetic depth ofThermotoga maritima inferred from analysis of thefus gene: Amino acid sequence of elongation factor G and organization of theThermotoga str operon, Journal of Molecular Evolution, vol.12, issue.2, pp.142-151, 1991. ,
DOI : 10.1007/BF02193628
The ???effective number of codons??? used in a gene, Gene, vol.87, issue.1, pp.23-29, 1990. ,
DOI : 10.1016/0378-1119(90)90491-9