Genetic diversity, clonality and sexuality in Toxoplasma gondii, International Journal for Parasitology, vol.34, issue.10, pp.1185-1196, 2004. ,
DOI : 10.1016/j.ijpara.2004.06.007
Microsatellite analysis of Toxoplasma gondii shows considerable polymorphism structured into two main clonal groups, International Journal for Parasitology, vol.32, issue.1, pp.27-38, 2002. ,
DOI : 10.1016/S0020-7519(01)00301-0
Isolates with 15 Microsatellite Markers in a Single Multiplex PCR Assay, Journal of Clinical Microbiology, vol.48, issue.12, pp.4641-4645, 2010. ,
DOI : 10.1128/JCM.01152-10
URL : https://hal.archives-ouvertes.fr/hal-00677196
Isolates Associated with Toxoplasmosis in Immunocompromised Patients and Correlation with Clinical Findings, The Journal of Infectious Diseases, vol.199, issue.8, pp.1155-1167, 2009. ,
DOI : 10.1086/597477
URL : https://hal.archives-ouvertes.fr/hal-00374813
Microsatellite Markers Reveal a Spectrum of Population Structures in the Malaria Parasite Plasmodium falciparum, Molecular Biology and Evolution, vol.17, issue.10, pp.1467-1482, 2000. ,
DOI : 10.1093/oxfordjournals.molbev.a026247
Toxoplasma gondii in Vancouver Island Cougars (Felis concolor vancouverensis): Serology and Oocyst Shedding, The Journal of Parasitology, vol.84, issue.2, pp.438-440, 1998. ,
DOI : 10.2307/3284508
Expansion of host range as a driving force in the evolution of Toxoplasma, Mem??rias do Instituto Oswaldo Cruz, vol.104, issue.2, pp.179-184, 2009. ,
DOI : 10.1590/S0074-02762009000200009
Severe acute disseminated toxoplasmosis acquired by an immunocompetent patient in French Guiana. Scand, J. Infect. Dis, vol.34, pp.311-314, 2002. ,
A new evolutionary scenario for the Mycobacterium tuberculosis complex, Proc. Natl. Acad. Sci. U. S. A. 99, pp.3684-3689, 2002. ,
The imprint of the Slave Trade in an African American population: mitochondrial DNA, Y chromosome and HTLV-1 analysis in the Noir Marron of French Guiana, BMC Evolutionary Biology, vol.10, issue.1, p.314, 2010. ,
DOI : 10.1186/1471-2148-10-314
URL : https://hal.archives-ouvertes.fr/pasteur-00530132
in Noncarnivorous Free-Ranging Neotropical Mammals in French Guiana, Vector-Borne and Zoonotic Diseases, vol.2, issue.1, pp.11-17, 2002. ,
DOI : 10.1089/153036602760260733
, French Guiana, Emerging Infectious Diseases, vol.15, issue.4, pp.656-658, 2009. ,
DOI : 10.3201/eid1504.081306
Phylogenetic Analysis: Models and Estimation Procedures, Evolution, vol.21, issue.3, pp.233-257, 1967. ,
DOI : 10.2307/2406616
Seroepidemiology of toxoplasmosis in amerindians from western Venezuela, Am. J. Trop. Med. Hyg, vol.65, pp.131-135, 2001. ,
Consequences of changing biodiversity, Nature, vol.405, issue.6783, pp.234-242, 2000. ,
DOI : 10.1038/35012241
Severe toxoplasmosis caused by a Toxoplasma gondii strain with a new isoenzyme type acquired in French Guyana, J. Clin. Microbiol, vol.36, p.324, 1998. ,
Ecologic Correlates of Toxoplasma gondii Exposure in Free-ranging Neotropical Mammals, Journal of Wildlife Diseases, vol.39, issue.2, pp.456-459, 2003. ,
DOI : 10.7589/0090-3558-39.2.456
Fatal Outbreak of Human Toxoplasmosis along the Maroni River: Epidemiological, Clinical, and Parasitological Aspects, Clinical Infectious Diseases, vol.45, issue.7, pp.88-95, 2007. ,
DOI : 10.1086/521246
URL : https://hal.archives-ouvertes.fr/hal-00349111
Atypical Toxoplasma gondii strain from a free-living jaguar (Panthera onca) in French Guiana, Am. J. Trop. Med. Hyg, vol.78, pp.195-197, 2008. ,
URL : https://hal.archives-ouvertes.fr/hal-00337687
Direct agglutination test for diagnosis of Toxoplasma infection: method for increasing sensitivity and specificity, J. Clin. Microbiol, vol.11, pp.562-568, 1980. ,
Seroepidemiology of toxoplasmosis in a Yucpa Amerindian community of Sierra de Perija, Zulia State, Venezuela. Rev. Med. Chil, vol.131, pp.1003-1010, 2003. ,
Toxoplasmosis of Animals and Humans, second ed, 2010. ,
Molecular and biological characterization of Toxoplasma gondii isolates from free-range chickens from Guyana, South America, identified several unique and common parasite genotypes, Parasitology, vol.35, issue.11, pp.1559-1565, 2007. ,
DOI : 10.1016/j.vetpar.2006.03.023
A New Atypical Highly Mouse Virulent Toxoplasma gondii Genotype Isolated from a Wild Black Bear in Alaska, Journal of Parasitology, vol.96, issue.4, 2010. ,
DOI : 10.1645/GE-2429.1
Seroprevalence and Isolation of Toxoplasma gondii from Free-Range Chickens in Ghana, Indonesia, Italy, Poland, and Vietnam, Journal of Parasitology, vol.94, issue.1, pp.68-71, 2008. ,
DOI : 10.1645/GE-1362.1
Genetic characterization of Toxoplasma gondii isolates in dogs from Vietnam suggests their South American origin, Veterinary Parasitology, vol.146, issue.3-4, pp.347-351, 2007. ,
DOI : 10.1016/j.vetpar.2007.03.008
Prevalence of Toxoplasma gondii in dogs from Sri Lanka and genetic characterization of the parasite isolates, Veterinary Parasitology, vol.146, issue.3-4, pp.341-346, 2007. ,
DOI : 10.1016/j.vetpar.2007.03.009
Biologic and genetic comparison of Toxoplasma gondii isolates in free-range chickens from the northern Par?? state and the southern state Rio Grande do Sul, Brazil revealed highly diverse and distinct parasite populations, Veterinary Parasitology, vol.143, issue.2, pp.182-188, 2007. ,
DOI : 10.1016/j.vetpar.2006.08.024
Characterization of Toxoplasma gondii from Raccoons (Procyon lotor), Coyotes (Canis latrans), and Striped Skunks (Mephitis mephitis) in Wisconsin Identified Several Atypical Genotypes, Journal of Parasitology, vol.93, issue.6, pp.1524-1527, 2007. ,
DOI : 10.1645/GE-1245.1
Genetic and biologic characterization of Toxoplasma gondii isolates of cats from China, Veterinary Parasitology, vol.145, issue.3-4, pp.352-356, 2007. ,
DOI : 10.1016/j.vetpar.2006.12.016
Coccidia (Eimeriidae) of Canidae and Felidae, 2000. ,
High level of genetic differentiation for allelic richness among populations of the argan tree [Argania spinosa (L.) Skeels] endemic to Morocco, 1996. ,
The roles of cats and dogs in the transmission of Toxoplasma infection in Kuna and Embera children in eastern Panama, Revista Panamericana de Salud P??blica, vol.16, issue.3, pp.176-186, 2004. ,
DOI : 10.1590/S1020-49892004000900004
Detecting the number of clusters of individuals using the software structure: a simulation study, Molecular Ecology, vol.16, issue.8, pp.2611-2620, 2005. ,
DOI : 10.1098/rspb.2001.1600
Isolation by distance and sharp discontinuities in gene frequencies: implications for the phylogeography of an alpine insect species, Carabus solieri, Molecular Ecology, vol.28, issue.7, pp.1883-1897, 2004. ,
DOI : 10.1111/j.1365-294X.2004.02212.x
Fstat, A Program to Estimate and Test Gene Diversities and Fixation Indices Version 2, 2002. ,
Unusual Abundance of Atypical Strains Associated with Human Ocular Toxoplasmosis, The Journal of Infectious Diseases, vol.184, issue.5, pp.633-639, 2001. ,
DOI : 10.1086/322800
The origin of malaria: mixed messages from genetic diversity, Nature Reviews MicroBiology, vol.19, issue.1, pp.15-22, 2004. ,
DOI : 10.1093/molbev/msg009
A simple sequentially rejective multiple test procedure, Scand. J. Statist, vol.6, pp.65-70, 1979. ,
Toxoplasma gondii Comprises Three Clonal Lineages: Correlation of Parasite Genotype with Human Disease, Journal of Infectious Diseases, vol.172, issue.6, pp.1561-1566, 1995. ,
DOI : 10.1093/infdis/172.6.1561
Development of Toxoplasma oocysts in neotropical felidae, Am. J. Trop. Med. Hyg, vol.21, pp.512-517, 1972. ,
adegenet: a R package for the multivariate analysis of genetic markers, Bioinformatics, vol.24, issue.11, pp.1403-1405, 2008. ,
DOI : 10.1093/bioinformatics/btn129
URL : https://hal.archives-ouvertes.fr/hal-00428105
Discriminant analysis of principal components: a new method for the analysis of genetically structured populations, BMC Genetics, vol.11, issue.1, p.94, 2010. ,
DOI : 10.1186/1471-2156-11-94
URL : https://hal.archives-ouvertes.fr/hal-00539267
The genetic implications of habitat fragmentation for animals, National Research Council of Canada, 2007. ,
Recent transcontinental sweep of Toxoplasma gondii driven by a single monomorphic chromosome, Proceedings of the National Academy of Sciences, vol.104, issue.37, pp.14872-14877, 2007. ,
DOI : 10.1073/pnas.0702356104
URL : https://hal.archives-ouvertes.fr/hal-00349107
Human Impacts on Genetic Diversity in Forest Ecosystems, Oikos, vol.63, issue.1, 1992. ,
DOI : 10.2307/3545518
Transmission dynamics of Toxoplasma gondii on a pig farm, Infection, Genetics and Evolution, vol.3, issue.2, pp.135-141, 2003. ,
DOI : 10.1016/S1567-1348(03)00067-4
Globalization and the population structure of Toxoplasma gondii, Proceedings of the National Academy of Sciences, vol.103, issue.30, pp.11423-11428, 2006. ,
DOI : 10.1073/pnas.0601438103
Toxoplasmosis in wild and domestic animals Toxoplasma gondii. The Model Apicomplexan: Perspectives and Methods, pp.133-152, 2007. ,
Whole genome sequencing of a natural recombinant Toxoplasma gondii strain reveals chromosome sorting and local allelic variants, Genome Biology, vol.10, issue.5, p.53, 2009. ,
DOI : 10.1186/gb-2009-10-5-r53
The detection of disease clustering and a generalized regression approach, Cancer Res, vol.27, pp.209-220, 1967. ,
Additional Haplogroups of Toxoplasma gondii out of Africa: Population Structure and Mouse-Virulence of Strains from Gabon, PLoS Neglected Tropical Diseases, vol.123, issue.11, p.876, 2010. ,
DOI : 10.1371/journal.pntd.0000876.s004
URL : https://hal.archives-ouvertes.fr/hal-00539268
Oral Infections with Toxoplasma Cysts and Oocysts in Felines, Other Mammals, and in Birds, The Journal of Parasitology, vol.58, issue.5, pp.928-937, 1972. ,
DOI : 10.2307/3286588
Estimation of fixation indices and gene diversities, Annals of Human Genetics, vol.15, issue.3, pp.253-259, 1983. ,
DOI : 10.1016/0040-5809(77)90014-4
Disseminated toxoplasmosis in an immunocompetent patient from Peruvian Amazon, Revista do Instituto de Medicina Tropical de S??o Paulo, vol.52, issue.2, pp.107-110, 2010. ,
DOI : 10.1590/S0036-46652010000200008
State of cat genomics, Trends Genet, vol.24, pp.268-279, 2008. ,
Population structure and mouse-virulence of Toxoplasma gondii in Brazil, International Journal for Parasitology, vol.38, issue.5, pp.561-569, 2008. ,
DOI : 10.1016/j.ijpara.2007.09.004
Biology of Toxoplasma gondii Toxoplasmosis: A Comprehensive Clinical Guide, pp.1-42, 2001. ,
Inference of population structure using multilocus genotype data, Genetics, vol.155, pp.945-959, 2000. ,
R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, 2009. ,
The origin of malignant malaria, Proc. Natl. Acad. Sci. U. S. A. 106, pp.14902-14907, 2009. ,
DOI : 10.1073/pnas.0907740106
: Clonal Expansion Driven by Infrequent Recombination and Selective Sweeps, Annual Review of Microbiology, vol.62, issue.1, pp.329-351, 2008. ,
DOI : 10.1146/annurev.micro.62.081307.162925
Recent Expansion of Toxoplasma Through Enhanced Oral Transmission, Science, vol.299, issue.5605, pp.414-416, 2003. ,
DOI : 10.1126/science.1078035
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0, Molecular Biology and Evolution, vol.24, issue.8, pp.1596-1599, 2007. ,
DOI : 10.1093/molbev/msm092
Plasmodium falciparum Accompanied the Human Expansion out of Africa, Current Biology, vol.20, issue.14, pp.1283-1289, 2010. ,
DOI : 10.1016/j.cub.2010.05.053
Toxoplasma gondii: from animals to humans, International Journal for Parasitology, vol.30, issue.12-13, pp.1217-1258, 2000. ,
DOI : 10.1016/S0020-7519(00)00124-7
Separating the wheat from the chaff: patterns of genetic differentiation in high gene flow species, Journal of Heredity, vol.89, issue.5, pp.438-450, 1998. ,
DOI : 10.1093/jhered/89.5.438
Epidemics and History: Disease, Power and Imperialism, 1997. ,
THE GENETICAL STRUCTURE OF POPULATIONS, Annals of Eugenics, vol.31, issue.111, pp.323-354, 1951. ,
DOI : 10.1111/j.1469-1809.1949.tb02451.x
Genetic characterization of Toxoplasma gondii isolates from China, Parasitology International, vol.58, issue.2, pp.193-195, 2009. ,
DOI : 10.1016/j.parint.2009.01.006