A. Ivens, C. Peacock, and E. Worthey, The Genome of the Kinetoplastid Parasite, Leishmania major, Science, vol.309, issue.5733, pp.436-442, 2005.
DOI : 10.1126/science.1112680

A. Rochette, F. Raymond, and J. Ubeda, Genome-wide gene expression profiling analysis of Leishmania major and Leishmania infantum developmental stages reveals substantial differences between the two species, BMC Genomics, vol.9, issue.1, p.255, 2008.
DOI : 10.1186/1471-2164-9-255

F. Guerfali, D. Laouini, and L. Guizani-tabbane, Simultaneous gene expression profiling in human macrophages infected with Leishmania major parasites using SAGE, BMC Genomics, vol.9, issue.1, p.238, 2008.
DOI : 10.1186/1471-2164-9-238

URL : https://hal.archives-ouvertes.fr/hal-00289936

G. Srividya, R. Duncan, and P. Sharma, Transcriptome analysis during the process of in vitro differentiation of Leishmania donovani using genomic microarrays, Parasitology, vol.190, issue.11, pp.1527-1539, 2007.
DOI : 10.2174/1566524043360221

A. Saxena, T. Lahav, and N. Holland, Analysis of the Leishmania donovani transcriptome reveals an ordered progression of transient and permanent changes in gene expression during differentiation, Molecular and Biochemical Parasitology, vol.152, issue.1, pp.53-65, 2007.
DOI : 10.1016/j.molbiopara.2006.11.011

K. Leifso, G. Cohen-freue, N. Dogra, A. Murray, and W. Mcmaster, Genomic and proteomic expression analysis of Leishmania promastigote and amastigote life stages: The Leishmania genome is constitutively expressed, Molecular and Biochemical Parasitology, vol.152, issue.1, pp.35-46, 2007.
DOI : 10.1016/j.molbiopara.2006.11.009

T. Holzer, W. Mcmaster, and J. Forney, Expression profiling by whole-genome interspecies microarray hybridization reveals differential gene expression in procyclic promastigotes, lesion-derived amastigotes, and axenic amastigotes in Leishmania mexicana, Molecular and Biochemical Parasitology, vol.146, issue.2, pp.198-218, 2006.
DOI : 10.1016/j.molbiopara.2005.12.009

F. Mcnicoll, J. Drummelsmith, and M. Muller, A combined proteomic and transcriptomic approach to the study of stage differentiation inLeishmania infantum, PROTEOMICS, vol.25, issue.12, pp.3567-3581, 2006.
DOI : 10.1002/pmic.200500853

V. Velculescu, L. Zhang, B. Vogelstein, and K. Kinzler, Serial Analysis of Gene Expression, Science, vol.270, issue.5235, pp.484-491, 1995.
DOI : 10.1126/science.270.5235.484

S. Lee, T. Clark, and J. Chen, Correct Identification of Genes from Serial Analysis of Gene Expression Tag Sequences, Genomics, vol.79, issue.4, pp.598-602, 2002.
DOI : 10.1006/geno.2002.6730

R. Tuteja and N. Tuteja, Serial Analysis of Gene Expression: Applications in Malaria Parasite, Yeast, Plant, and Animal Studies, Journal of Biomedicine and Biotechnology, vol.2004, issue.2, pp.106-112, 2004.
DOI : 10.1155/S1110724304308016

Y. Kim, Y. Jung, and Z. Xuan, Pan-genome isolation of low abundance transcripts using SAGE tag, FEBS Letters, vol.98, issue.28-29, pp.6721-6729, 2006.
DOI : 10.1016/j.febslet.2006.11.013

K. Boheler and M. Stern, The new role of SAGE in gene discovery, Trends in Biotechnology, vol.21, issue.2, pp.55-58, 2003.
DOI : 10.1016/S0167-7799(02)00031-8

S. Sheather and M. Jones, A reliable data-based bandwidth selection method for kernel density estimation, J Royal Statist Soc B, vol.53, pp.683-690, 1991.

G. Kapler and S. Beverley, Transcriptional mapping of the amplified region encoding the dihydrofolate reductase-thymidylate synthase of Leishmania major reveals a high density of transcripts, including overlapping and antisense RNAs., Molecular and Cellular Biology, vol.9, issue.9, pp.3959-72, 1989.
DOI : 10.1128/MCB.9.9.3959

S. Belli, S. Monnerat, and C. Schaff, Sense and antisense transcripts in the histone H1 (HIS-1) locus of Leishmania major, International Journal for Parasitology, vol.33, issue.9, pp.965-75, 2003.
DOI : 10.1016/S0020-7519(03)00126-7

S. Monnerat, S. Martinez-calvillo, and E. Worthey, Genomic organization and gene expression in a chromosomal region of Leishmania major, Molecular and Biochemical Parasitology, vol.134, issue.2, pp.233-276, 2004.
DOI : 10.1016/j.molbiopara.2003.12.004

M. Kanehisa, S. Goto, M. Furumichi, M. Tanabe, and M. Hirakawa, KEGG for representation and analysis of molecular networks involving diseases and drugs, Nucleic Acids Research, vol.38, issue.Database, pp.355-60, 2010.
DOI : 10.1093/nar/gkp896

S. Robinson, D. Cram, C. Lewis, and I. Parkin, Maximizing the Efficacy of SAGE Analysis Identifies Novel Transcripts in Arabidopsis, PLANT PHYSIOLOGY, vol.136, issue.2, pp.3223-3233, 2004.
DOI : 10.1104/pp.104.043406

C. Fizames, S. Munos, and C. Cazettes, The Arabidopsis Root Transcriptome by Serial Analysis of Gene Expression. Gene Identification Using the Genome Sequence, PLANT PHYSIOLOGY, vol.134, issue.1, pp.67-80, 2004.
DOI : 10.1104/pp.103.030536

R. Malig, C. Varela, E. Agosin, and F. Melo, Accurate and unambiguous tag-togene mapping in serial analysis of gene expression, BMC Bioinformatics, vol.7, issue.1, p.487, 2006.
DOI : 10.1186/1471-2105-7-487

E. Pleasance, M. Marra, and S. Jones, Assessment of SAGE in Transcript Identification, Genome Research, vol.13, issue.6, pp.1203-1215, 2003.
DOI : 10.1101/gr.873003

L. Cheval, F. Pierrat, and C. Dossat, Atlas of gene expression in the mouse kidney: new features of glomerular parietal cells, Physiological Genomics, vol.43, issue.3, pp.161-73, 2011.
DOI : 10.1152/physiolgenomics.00093.2010

W. Su, H. Xiong, and J. Fang, Natural antisense transcripts regulate gene expression in an epigenetic manner, Biochemical and Biophysical Research Communications, vol.396, issue.2, pp.177-81, 2010.
DOI : 10.1016/j.bbrc.2010.04.147

D. Piquemal, T. Commes, and L. Manchon, Transcriptome Analysis of Monocytic Leukemia Cell Differentiation, Genomics, vol.80, issue.3, pp.361-371, 2002.
DOI : 10.1006/geno.2002.6836

B. Welch, The generalisation of student's problems when several different population variances are involved, Biom, vol.34, pp.28-35, 1947.

S. Shapiro and M. Wilk, An analysis of variance test for normality (complete samples), Biom, vol.52, pp.591-611, 1965.

J. Lu, A. Lal, B. Merriman, S. Nelson, and G. Riggins, A comparison of gene expression profiles produced by SAGE, long SAGE, and oligonucleotide chips, Genomics, vol.84, issue.4, pp.631-637, 2004.
DOI : 10.1016/j.ygeno.2004.06.014

C. Clayton and M. Shapira, Post-transcriptional regulation of gene expression in trypanosomes and leishmanias, Molecular and Biochemical Parasitology, vol.156, issue.2, pp.93-101, 2007.
DOI : 10.1016/j.molbiopara.2007.07.007

R. Aline, J. Scholler, and K. Stuart, Transcripts from the co-transposed segment of variant surface glycoprotein genes are in Trypanosoma brucei polyribosomes, Molecular and Biochemical Parasitology, vol.32, issue.2-3, pp.169-78, 1989.
DOI : 10.1016/0166-6851(89)90068-6

M. Smith, M. Blanchette, and B. Papadopoulou, Improving the prediction of mRNA extremities in the parasitic protozoan Leishmania, BMC Bioinformatics, vol.9, issue.1, p.158, 2008.
DOI : 10.1186/1471-2105-9-158

L. Quijada, M. Soto, C. Alonso, and J. Requena, Identification of a putative regulatory element in the 3???-untranslated region that controls expression of HSP70 in Leishmania infantum, Molecular and Biochemical Parasitology, vol.110, issue.1, pp.79-91, 2000.
DOI : 10.1016/S0166-6851(00)00258-9

A. Zilka, S. Garlapati, E. Dahan, V. Yaolsky, and M. Shapira, Developmental regulation of heat shock protein 83 in Leishmania. 3' processing and mRNA stability control transcript abundance, and translation id directed by a determinant in the 3'-untranslated region, J Biol Chem, vol.276, pp.47922-47929, 2001.

S. Altschul, T. Madden, and A. Schaffer, Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Research, vol.25, issue.17, pp.3389-3402, 1997.
DOI : 10.1093/nar/25.17.3389

C. Hertz-fowler, C. Peacock, and V. Wood, GeneDB: a resource for prokaryotic and eukaryotic organisms, Nucleic Acids Research, vol.32, issue.90001, pp.339-382, 2004.
DOI : 10.1093/nar/gkh007

R. Quéré, L. Manchon, and M. Lejeune, Mining SAGE data allows large-scale, sensitive screening of antisense transcript expression, Nucleic Acids Research, vol.32, issue.20, p.163, 2004.
DOI : 10.1093/nar/gnh161