T. Russo and J. Johnson, Medical and economic impact of extraintestinal infections due to Escherichia coli: focus on an increasingly important endemic problem, Microbes and Infection, vol.5, issue.5, pp.449-56, 2003.
DOI : 10.1016/S1286-4579(03)00049-2

B. Foxman, Epidemiology of urinary tract infections: incidence, morbidity, and economic costs, Am J Med, vol.113, issue.02, pp.10-1016, 2002.

M. Alam, D. Cohen, C. Butler, F. Dunstan, Z. Roberts et al., The additional costs of antibiotics and re-consultations for antibiotic-resistant Escherichia coli urinary tract infections managed in general practice, International Journal of Antimicrobial Agents, vol.33, issue.3, pp.255-262, 2009.
DOI : 10.1016/j.ijantimicag.2008.08.027

A. Manges, J. Johnson, B. Foxman, O. Bryan, T. Fullerton et al., Clonal Group, New England Journal of Medicine, vol.345, issue.14, pp.1007-1020, 2001.
DOI : 10.1056/NEJMoa011265

W. Burman, P. Breese, B. Murray, K. Singh, H. Batal et al., Conventional and molecular epidemiology of trimethoprim-sulfamethoxazole resistance among urinary Escherichia coli isolates, The American Journal of Medicine, vol.115, issue.5, pp.358-64, 2003.
DOI : 10.1016/S0002-9343(03)00372-3

J. Johnson, A. Manges, O. Bryan, T. Riley, and L. , A disseminated multidrug-resistant clonal group of uropathogenic Escherichia coli in pyelonephritis, The Lancet, vol.359, issue.9325, pp.2249-51, 2002.
DOI : 10.1016/S0140-6736(02)09264-4

I. Phillips, S. Eykyn, A. King, W. Gransden, R. B. Frost et al., EPIDEMIC MULTIRESISTANT ESCHERICHIA COLI INFECTION IN WEST LAMBETH HEALTH DISTRICT, The Lancet, vol.331, issue.8593, pp.1038-1079, 1988.
DOI : 10.1016/S0140-6736(88)91853-3

B. Olesen, H. Kolmos, F. Orskov, and I. Orskov, Cluster of Multiresistant Escherichia coli O78:H10 in Greater Copenhagen, Scandinavian Journal of Infectious Diseases, vol.162, issue.4, pp.406-416, 1994.
DOI : 10.3109/00365549409008613

J. Pitout, D. Gregson, D. Church, S. Elsayed, and K. Laupland, Community-Wide Outbreaks of Clonally Related CTX-M-14 ??-Lactamase-Producing Escherichia coli Strains in the Calgary Health Region, Journal of Clinical Microbiology, vol.43, issue.6, pp.2844-2853, 2005.
DOI : 10.1128/JCM.43.6.2844-2849.2005

T. Jones and W. Schaffner, New Perspectives on the Persistent Scourge of Foodborne Disease, The Journal of Infectious Diseases, vol.191, issue.7, pp.1029-1060, 2005.
DOI : 10.1086/428509

W. Stamm, An Epidemic of Urinary Tract Infections?, New England Journal of Medicine, vol.345, issue.14, pp.1055-1062, 2001.
DOI : 10.1056/NEJM200110043451409

J. Johnson, M. Kuskowski, K. Smith, O. Bryan, T. Tatini et al., in Retail Foods, The Journal of Infectious Diseases, vol.191, issue.7, pp.1040-1049, 2005.
DOI : 10.1086/428451

J. Johnson, M. Kuskowski, M. Menard, A. Gajewski, M. Xercavins et al., Isolates in Relation to Ciprofloxacin Resistance Status, The Journal of Infectious Diseases, vol.194, issue.1, pp.71-79, 2006.
DOI : 10.1086/504921

J. Johnson, M. Sannes, C. Croy, B. Johnston, C. Clabots et al., from Humans and Poultry Products, Minnesota and Wisconsin, 2002???2004, Emerging Infectious Diseases, vol.13, issue.6, pp.838-884, 2002.
DOI : 10.3201/eid1306.061576

URL : http://doi.org/10.3201/eid1306.061576

C. Schroeder, D. White, B. Ge, Y. Zhang, P. Mcdermott et al., Isolation of antimicrobial-resistant Escherichia coli from retail meats purchased in Greater Washington, DC, USA, International Journal of Food Microbiology, vol.85, issue.1-2, pp.197-202, 2003.
DOI : 10.1016/S0168-1605(02)00508-1

A. Manges, S. Smith, B. Lau, C. Nuval, J. Eisenberg et al., Causing Urinary Tract Infections: A Case???Control Study, Foodborne Pathogens and Disease, vol.4, issue.4, pp.419-310026, 2007.
DOI : 10.1089/fpd.2007.0026

A. Manges, H. Tabor, P. Tellis, C. Vincent, and P. Tellier, that Cause Urinary Tract Infections, Emerging Infectious Diseases, vol.14, issue.10, pp.1575-83, 2008.
DOI : 10.3201/eid1410.080102

A. Manges, P. Dietrich, and L. Riley, Clonal Groups Causing Community???Acquired Pyelonephritis, Clinical Infectious Diseases, vol.38, issue.3, pp.329-363, 2004.
DOI : 10.1086/380640

A. Manges, F. Perdreau-remington, O. Solberg, and L. Riley, Multidrug-resistant Escherichia coli clonal groups causing community-acquired bloodstream infections, Journal of Infection, vol.53, issue.1, pp.25-34, 2006.
DOI : 10.1016/j.jinf.2005.09.012

T. Hooton and W. Stamm, DIAGNOSIS AND TREATMENT OF UNCOMPLICATED URINARY TRACT INFECTION, Infectious Disease Clinics of North America, vol.11, issue.3, pp.551-81, 1997.
DOI : 10.1016/S0891-5520(05)70373-1

A. Manges, P. Natarajan, O. Solberg, P. Dietrich, and L. Riley, The changing prevalence of drug-resistant Escherichia coli clonal groups in a community: evidence for community outbreaks of urinary tract infections, DOI: 10.1017/ S0950268805005005 23. Government of Canada. Canadian Integrated Program for Antimicrobial Resistance Surveillance (CIPARS), pp.425-456, 2006.
DOI : 10.1017/S0950268805005005

C. Government, Enumeration of E. coli and coliforms in food products and food ingredients using 3M Petrifi lm E. coli count plates, 2001.

A. Manges, P. Tellis, C. Vincent, K. Lifeso, G. Geneau et al., Multi-locus variable number tandem repeat analysis for Escherichia coli causing extraintestinal infections, Journal of Microbiological Methods, vol.79, issue.2, pp.211-214, 2009.
DOI : 10.1016/j.mimet.2009.09.006

J. Johnson, O. Bryan, and T. , Improved repetitive-element PCR fi ngerprinting for resolving pathogenic and nonpathogenic phylogenetic groups within Escherichia coli, Clin Diagn Lab Immunol, vol.7, pp.265-73, 2000.

J. Bender, C. Hedberg, J. Besser, D. Boxrud, K. Macdonald et al., O157:H7 Infections in Minnesota by Molecular Subtyping, New England Journal of Medicine, vol.337, issue.6, pp.388-94, 1997.
DOI : 10.1056/NEJM199708073370604

F. Tenover, R. Arbeit, R. Goering, P. Mickelsen, B. Murray et al., Interpreting chromosomal DNA restriction patterns produced by pulsed-fi eld gel electrophoresis: criteria for bacterial strain typing, J Clin Microbiol, vol.33, pp.2233-2242, 1995.

T. Wirth, D. Falush, R. Lan, F. Colles, P. Mensa et al., Sex and virulence in Escherichia coli: an evolutionary perspective, Molecular Microbiology, vol.179, issue.5, pp.1136-51, 2006.
DOI : 10.1111/j.1365-2958.2005.04985.x

URL : https://hal.archives-ouvertes.fr/hal-00174910

O. Clermont, S. Bonacorsi, and E. Bingen, Rapid and Simple Determination of the Escherichia coli Phylogenetic Group, Applied and Environmental Microbiology, vol.66, issue.10, pp.4555-4563, 2000.
DOI : 10.1128/AEM.66.10.4555-4558.2000

T. Johnson, Y. Wannemuehler, S. Johnson, A. Stell, C. Doetkrott et al., Comparison of Extraintestinal Pathogenic Escherichia coli Strains from Human and Avian Sources Reveals a Mixed Subset Representing Potential Zoonotic Pathogens, Applied and Environmental Microbiology, vol.74, issue.22, pp.7043-5001395, 2008.
DOI : 10.1128/AEM.01395-08

S. Cagnacci, L. Gualco, E. Debbia, G. Schito, and A. Marchese, European Emergence of Ciprofloxacin-Resistant Escherichia coli Clonal Groups O25:H4-ST 131 and O15:K52:H1 Causing Community-Acquired Uncomplicated Cystitis, Journal of Clinical Microbiology, vol.46, issue.8, pp.2605-1200640, 2008.
DOI : 10.1128/JCM.00640-08

J. Johnson, M. Menard, B. Johnston, M. Kuskowski, K. Nichol et al., Epidemic Clonal Groups of Escherichia coli as a Cause of Antimicrobial-Resistant Urinary Tract Infections in Canada, 2002 to 2004, Antimicrobial Agents and Chemotherapy, vol.53, issue.7, pp.2733-900297, 2002.
DOI : 10.1128/AAC.00297-09

M. Nicolas-chanoine, J. Blanco, V. Lefl-on-guibout, R. Demarty, M. Alonso et al., Intercontinental emergence of Escherichia coli clone O25:H4-ST131 producing CTX-M-15, Government of Canada. Canadian Integrated Program for Antimicrobial Resistance Surveillance (CIPARS), pp.273-81, 2005.
DOI : 10.1093/jac/dkm464

URL : https://hal.archives-ouvertes.fr/inserm-00258588

C. Government, Canadian Integrated Program for Antimicrobial Resistance Surveillance (CIPARS) 2007?preliminary results Public Health Agency of Canada, Guelph, 2008.