K. S. Baker, S. Todd, G. Marsh, A. Fernandez-loras, R. Suu-ire et al., Co-circulation of diverse paramyxoviruses in an urban African fruit bat population, Journal of General Virology, vol.93, issue.Pt_4, pp.850-856, 2012.
DOI : 10.1099/vir.0.039339-0

J. F. Drexler, V. M. Corman, F. Gloza-rausch, A. Seebens, A. Annan et al., Henipavirus RNA in African Bats, Henipavirus RNA in African bats, p.6367, 2009.
DOI : 10.1371/journal.pone.0006367.s002

J. F. Drexler, V. M. Corman, M. A. Muller, G. D. Maganga, P. Vallo et al., Bats host major mammalian paramyxoviruses, Nature Communications, vol.16, p.796, 2012.
DOI : 10.1126/science.1108871
URL : https://hal.archives-ouvertes.fr/pasteur-00700110

H. Field, C. De-jong, D. Melville, C. Smith, I. Smith et al., Hendra Virus Infection Dynamics in Australian Fruit Bats, PLoS ONE, vol.7, issue.12, p.28678, 2011.
DOI : 10.1371/journal.pone.0028678.s001

H. E. Field, Bats and Emerging Zoonoses: Henipaviruses and SARS, Zoonoses and Public Health, vol.2, issue.6-7, pp.6-7, 2009.
DOI : 10.1111/j.1863-2378.2008.01218.x

S. M. Goodman, Les Chauves-souris de Madagascar (The Bats of Madagascar) Association Vahatra, p.129, 2011.

S. M. Goodman, S. G. Cardiff, and F. H. Ratrimomanarivo, (Chiroptera: Emballonuridae) on Madagascar and identification and diagnosis of members of the genus, Systematics and Biodiversity, vol.14, issue.2, pp.283-292, 2008.
DOI : 10.2305/IUCN.CH.2001.SSC-AP.1.en

S. Guindon and O. Gascuel, A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood, Systematic Biology, vol.52, issue.5, pp.696-704, 2003.
DOI : 10.1080/10635150390235520

J. P. Huelsenbeck and F. Ronquist, MRBAYES: Bayesian inference of phylogenetic trees, Bioinformatics, vol.17, issue.8, pp.754-755, 2001.
DOI : 10.1093/bioinformatics/17.8.754

C. Iehle, G. Razafitrimo, J. Razainirina, N. Andriaholinirina, S. M. Goodman et al., Henipavirus and Tioman Virus Antibodies in Pteropodid Bats, Madagascar, Emerging Infectious Diseases, vol.13, issue.1, pp.159-161, 2007.
DOI : 10.3201/eid1301.060791

K. E. Jones, N. G. Patel, M. A. Levy, A. Storeygard, D. Balk et al., Global trends in emerging infectious diseases, Nature, vol.309, issue.7181, pp.990-993, 2008.
DOI : 10.1038/nature06536

M. Kearse, R. Moir, A. Wilson, S. Stones-havas, M. Cheung et al., Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data, Bioinformatics, vol.28, issue.12, pp.1647-1649, 2012.
DOI : 10.1093/bioinformatics/bts199

A. Kurth, C. Kohl, A. Brinkmann, A. Ebinger, J. A. Harper et al., Novel Paramyxoviruses in Free-Ranging European Bats, PLoS ONE, vol.53, issue.6, p.38688, 2012.
DOI : 10.1371/journal.pone.0038688.t003

L. S. Lambeth, M. Yu, D. E. Anderson, G. Crameri, B. T. Eaton et al., Complete genome sequence of Nariva virus, a rodent paramyxovirus, Archives of Virology, vol.152, issue.Pt 5, pp.199-207, 2009.
DOI : 10.1007/s00705-008-0287-3

Z. Li, M. Yu, H. Zhang, D. E. Magoffin, P. J. Jack et al., Beilong virus, a novel paramyxovirus with the largest genome of non-segmented negative-stranded RNA viruses, Virology, vol.346, issue.1, pp.219-228, 2006.
DOI : 10.1016/j.virol.2005.10.039

S. P. Luby, E. S. Gurley, and M. J. Hossain, Transmission of Human Infection with Nipah Virus, Clinical Infectious Diseases, vol.49, issue.11, pp.1743-1748, 2009.
DOI : 10.1086/647951

A. J. Mccarthy and S. J. Goodman, Reassessing conflicting evolutionary histories of the Paramyxoviridae and the origins of respiroviruses with Bayesian multigene phylogenies, Infection, Genetics and Evolution, vol.10, issue.1, pp.97-107, 2010.
DOI : 10.1016/j.meegid.2009.11.002

P. J. Miller, D. B. Boyle, B. T. Eaton, and L. F. Wang, Full-length genome sequence of Mossman virus, a novel paramyxovirus isolated from rodents in Australia, Virology, vol.317, issue.2, pp.330-344, 2003.
DOI : 10.1016/j.virol.2003.08.013

N. Myers, R. A. Mittermeier, C. G. Mittermeier, G. A. Da-fonseca, and J. Kent, Biodiversity hotspots for conservation priorities, Nature, vol.403, issue.6772, pp.853-858, 2000.
DOI : 10.1038/35002501

S. Tong, S. W. Chern, Y. Li, M. A. Pallansch, and L. J. Anderson, Sensitive and Broadly Reactive Reverse Transcription-PCR Assays To Detect Novel Paramyxoviruses, Journal of Clinical Microbiology, vol.46, issue.8, pp.2652-2658, 2008.
DOI : 10.1128/JCM.00192-08
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2519498

P. Tortosa, H. Pascalis, V. Guernier, E. Cardinale, L. Corre et al., Deciphering arboviral emergence within insular ecosystems, Infection, Genetics and Evolution, vol.12, issue.6, pp.1333-1339, 2012.
DOI : 10.1016/j.meegid.2012.03.024
URL : https://hal.archives-ouvertes.fr/hal-00842630

L. F. Wang, P. J. Walker, and L. L. Poon, Mass extinctions, biodiversity and mitochondrial function: are bats ???special??? as reservoirs for emerging viruses?, Current Opinion in Virology, vol.1, issue.6, pp.649-657, 2011.
DOI : 10.1016/j.coviro.2011.10.013

N. Weyeneth, S. M. Goodman, B. Appleton, R. Wood, and M. Ruedi, Wings or winds: inferring bat migration in a stepping-stone archipelago, Journal of Evolutionary Biology, vol.12, issue.6, pp.1298-1306, 2011.
DOI : 10.1111/j.1420-9101.2011.02262.x

S. Wong, S. Lau, P. Woo, and K. Y. Yuen, Bats as a continuing source of emerging infections in humans, Reviews in Medical Virology, vol.97, issue.2, pp.67-91, 2007.
DOI : 10.1002/rmv.520

P. C. Woo, S. K. Lau, B. H. Wong, A. Y. Wong, R. W. Poon et al., Complete Genome Sequence of a Novel Paramyxovirus, Tailam Virus, Discovered in Sikkim Rats, Journal of Virology, vol.85, issue.24, pp.13473-13474, 2011.
DOI : 10.1128/JVI.06356-11