J. Liu, S. Jiang, and S. Cheng, Analysis of current status of tuberculosis control and its strategy in China The Journal of The Chinese Antituberculosis Association, pp.129-131, 2003.

Y. Liu, W. Duan, and G. Xiong, The dynamic change of drug resistance of tuberculosis in Sichuan Province, Journal of Medical Informatics, vol.18, pp.9-10, 2002.

X. Y. Yang, N. M. Zhang, X. Diao, X. Mao, and Y. P. Li, Epidemiological analysis of pulmonary tuberculosis in Sichuan Province, China, 2000???2006, International Journal of Infectious Diseases, vol.12, issue.5, pp.534-554, 2000.
DOI : 10.1016/j.ijid.2008.02.011

K. Tang, H. Sun, and Y. Zhao, Characterization of rifampin-resistant isolates of Mycobacterium tuberculosis from Sichuan in China, Tuberculosis, vol.93, issue.1, pp.89-95, 2013.
DOI : 10.1016/j.tube.2012.10.009

R. Durmaz, T. Zozio, and S. , Genetic diversity and major spoligotype families of drug-resistant Mycobacterium tuberculosis clinical isolates from different regions of Turkey, Infection, Genetics and Evolution, vol.7, issue.4, pp.513-519, 2007.
DOI : 10.1016/j.meegid.2007.03.003

P. J. Easterbrook, A. Gibson, and S. Murad, High Rates of Clustering of Strains Causing Tuberculosis in Harare, Zimbabwe: a Molecular Epidemiological Study, Journal of Clinical Microbiology, vol.42, issue.10, pp.4536-4544, 2004.
DOI : 10.1128/JCM.42.10.4536-4544.2004

I. Filliol, J. R. Driscoll, and D. Van-soolingen, Snapshot of Moving and Expanding Clones of Mycobacterium tuberculosis and Their Global Distribution Assessed by Spoligotyping in an International Study, Journal of Clinical Microbiology, vol.41, issue.5, pp.1963-1970, 2003.
DOI : 10.1128/JCM.41.5.1963-1970.2003

J. Kamerbeek, L. Schouls, and A. Kolk, Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology, Journal of Clinical Microbiology, vol.35, issue.4, pp.907-914, 1997.

A. Thong-on, N. Smittipat, and T. Juthayothin, Variable-number tandem repeats typing of Mycobacterium tuberculosis isolates with low copy numbers of IS6110 in Thailand, Tuberculosis, vol.90, issue.1, pp.9-15, 2010.
DOI : 10.1016/j.tube.2009.10.006

B. V. Joseph, S. Soman, and I. Radhakrishnan, Molecular epidemiology of Mycobacterium tuberculosis isolates from Kerala, India using IS6110-RFLP, spoligotyping and MIRU-VNTRs, Infection, Genetics and Evolution, vol.16, pp.157-164, 2013.
DOI : 10.1016/j.meegid.2013.01.012
URL : https://hal.archives-ouvertes.fr/pasteur-00815566

Y. Zhao, Q. Feng, and K. Tang, The population structure of drug-resistant Mycobacterium tuberculosis clinical isolates from Sichuan in China, Infection, Genetics and Evolution, vol.12, issue.4, pp.718-724, 2012.
DOI : 10.1016/j.meegid.2011.09.022
URL : https://hal.archives-ouvertes.fr/pasteur-00691752

I. Radhakrishnan, Y. K. Manju, R. A. Kumar, and S. Mundayoor, Implications of Low Frequency of IS6110 in Fingerprinting Field Isolates of Mycobacterium tuberculosis from Kerala, India, Journal of Clinical Microbiology, vol.39, issue.4, p.1683, 2001.
DOI : 10.1128/JCM.39.4.1683.2001

B. Mathema, N. E. Kurepina, P. J. Bifani, and B. N. Kreiswirth, Molecular Epidemiology of Tuberculosis: Current Insights, Clinical Microbiology Reviews, vol.19, issue.4, pp.658-685, 2006.
DOI : 10.1128/CMR.00061-05

K. Kremer, J. R. Glynn, and T. Lillebaek, Definition of the Beijing/W Lineage of Mycobacterium tuberculosis on the Basis of Genetic Markers, Journal of Clinical Microbiology, vol.42, issue.9, pp.4040-4049, 2004.
DOI : 10.1128/JCM.42.9.4040-4049.2004

L. Fenner, B. Malla, and B. Ninet, ???Pseudo-Beijing???: Evidence for Convergent Evolution in the Direct Repeat Region of Mycobacterium tuberculosis, PLoS ONE, vol.164, issue.9, 2011.
DOI : 10.1371/journal.pone.0024737.t002

H. Alonso, S. Samper, and C. Martin, Mapping IS6110 in high-copy number Mycobacterium tuberculosis strains shows specific insertion points in the Beijing genotype, BMC Genomics, vol.14, issue.1, p.422, 2013.
DOI : 10.1111/j.1574-6968.1998.tb12803.x

J. L. De-beer, J. Van-ingen, and G. De-vries, Comparative Study of IS6110 Restriction Fragment Length Polymorphism and Variable-Number Tandem-Repeat Typing of Mycobacterium tuberculosis Isolates in the Netherlands, Based on a 5-Year Nationwide Survey, Journal of Clinical Microbiology, vol.51, issue.4, pp.1193-1198, 2013.
DOI : 10.1128/JCM.03061-12

W. J. Wei, I. Mokrousov, and Z. S. Gui, Evaluation of new variable-number tandem-repeat systems for typing Mycobacterium tuberculosis with Beijing genotype isolates from Beijing, China, Journal of Clinical Microbiology, vol.46, issue.3, pp.1045-1049, 2008.

I. Mokrousov, O. Narvskaya, and A. Vyazovaya, Mycobacterium tuberculosis Beijing Genotype in Russia: in Search of Informative Variable-Number Tandem-Repeat Loci, Journal of Clinical Microbiology, vol.46, issue.11, pp.3576-3584, 2008.
DOI : 10.1128/JCM.00414-08

T. Iwamoto, S. Yoshida, and K. Suzuki, strains predominated by the Beijing family, FEMS Microbiology Letters, vol.270, issue.1, pp.67-74, 2007.
DOI : 10.1111/j.1574-6968.2007.00658.x

Y. Murase, S. Mitarai, I. Sugawara, S. Kato, and S. Maeda, Promising loci of variable numbers of tandem repeats for typing Beijing family Mycobacterium tuberculosis, Journal of Medical Microbiology, vol.57, issue.7, pp.873-880, 2008.
DOI : 10.1099/jmm.0.47564-0

C. Allix-béguec, C. Wahl, and M. Hanekom, Proposal of a Consensus Set of Hypervariable Mycobacterial Interspersed Repetitive-Unit-Variable-Number Tandem-Repeat Loci for Subtyping of Mycobacterium tuberculosis Beijing Isolates, Journal of Clinical Microbiology, vol.52, issue.1, pp.164-172, 2014.
DOI : 10.1128/JCM.02519-13

P. Billamas, N. Smittipat, and T. Juthayothin, Evolution of some variable-number tandem repeat loci among a group of Beijing strains of Mycobacterium tuberculosis, Tuberculosis, vol.87, issue.6, pp.498-501, 2007.
DOI : 10.1016/j.tube.2007.08.005

H. Y. Dong, Z. G. Liu, and B. Lv, Spoligotypes of Mycobacterium tuberculosis from Different Provinces of China, Journal of Clinical Microbiology, vol.48, issue.11, pp.4102-4106, 2010.
DOI : 10.1128/JCM.00549-10

X. Li, P. Xu, and X. Shen, Non-Beijing Strains of Mycobacterium tuberculosis in China, Journal of Clinical Microbiology, vol.49, issue.1, pp.392-395, 2011.
DOI : 10.1128/JCM.00754-10

D. Van-soolingen, P. W. Hermans, P. E. De-haas, D. R. Soll, and J. D. Van-embden, Occurrence and stability of insertion sequences in Mycobacterium tuberculosis complex strains: evaluation of an insertion sequence-dependent DNA polymorphism as a tool in the epidemiology of tuberculosis, Journal of Clinical Microbiology, vol.29, issue.11, pp.2578-2586, 1991.

J. D. Van-embden, M. D. Cave, and J. T. Crawford, Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: recommendations for a standardized methodology, Journal of Clinical Microbiology, vol.31, issue.2, pp.406-409, 1993.

P. Supply, C. Allix, and S. Lesjean, Proposal for Standardization of Optimized Mycobacterial Interspersed Repetitive Unit-Variable-Number Tandem Repeat Typing of Mycobacterium tuberculosis, Journal of Clinical Microbiology, vol.44, issue.12, pp.4498-4510, 2006.
DOI : 10.1128/JCM.01392-06

K. Brudey, J. R. Driscoll, and L. Rigouts, Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology, BMC Microbiology, vol.6, issue.23, 2006.

C. Demay, B. Liens, and T. Burguì-ere, SITVITWEB ??? A publicly available international multimarker database for studying Mycobacterium tuberculosis genetic diversity and molecular epidemiology, Infection, Genetics and Evolution, vol.12, issue.4, pp.755-766, 2012.
DOI : 10.1016/j.meegid.2012.02.004
URL : https://hal.archives-ouvertes.fr/pasteur-00691750

P. R. Hunter and M. A. Gaston, Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity, Journal of Clinical Microbiology, vol.26, issue.11, pp.2465-2466, 1988.

I. Mokrousov, The quiet and controversial: Ural family of Mycobacterium tuberculosis, Infection, Genetics and Evolution, vol.12, issue.4, pp.619-629, 2012.
DOI : 10.1016/j.meegid.2011.09.026

Y. K. Park, G. H. Bai, and S. J. Kim, Restriction fragment length polymorphism analysis of Mycobacterium tuberculosis isolated from countries in the western pacific region, Journal of Clinical Microbiology, vol.38, issue.1, pp.191-197, 2000.

C. B. Ford, R. R. Shah, and M. K. Maeda, Mycobacterium tuberculosis mutation rate estimates from different lineages predict substantial differences in the emergence of drug-resistant tuberculosis, Nature Genetics, vol.69, issue.7, pp.784-790, 2013.
DOI : 10.1126/science.1124410

R. Sahadevan, S. Narayanan, C. N. Paramasivan, R. Prabhakar, and P. R. Narayanan, Restriction fragment length polymorphism typing of clinical isolates of Mycobacterium tuberculosis from patients with pulmonary tuberculosis in Madras, India, by use of direct-repeat probe, Journal of Clinical Microbiology, vol.33, issue.11, pp.3037-3039, 1995.

D. Van-soolingen, P. E. De-haas, P. W. Hermans, P. M. Groenen, and J. D. Van-embden, Comparison of various repetitive DNA elements as genetic markers for strain differentiation and epidemiology of Mycobacterium tuberculosis, Journal of Clinical Microbiology, vol.31, issue.8, pp.1987-1995, 1993.

V. Valcheva, I. Mokrousov, O. Narvskaya, N. Rastogi, and N. Markova, Utility of New 24-Locus Variable-Number Tandem-Repeat Typing for Discriminating Mycobacterium tuberculosis Clinical Isolates Collected in Bulgaria, Journal of Clinical Microbiology, vol.46, issue.9, pp.3005-3011, 2008.
DOI : 10.1128/JCM.00437-08

C. R. Mcevoy, A. A. Falmer, N. C. Van-pittius, T. C. Victor, P. D. Van-helden et al., The role of IS6110 in the evolution of Mycobacterium tuberculosis, Tuberculosis, vol.87, issue.5, pp.393-404, 2007.
DOI : 10.1016/j.tube.2007.05.010

R. M. Houben and J. R. Glynn, A systematic review and meta-analysis of molecular epidemiological studies of tuberculosis: development of a new tool to aid interpretation, Tropical Medicine & International Health, vol.35, issue.Suppl. 2, pp.892-909, 2009.
DOI : 10.1111/j.1365-3156.2009.02316.x

S. Phyu, R. Stavrum, T. Lwin, S. S. Svendsen, T. Ti et al., Predominance of Mycobacterium tuberculosis EAI and Beijing Lineages in Yangon, Myanmar, Journal of Clinical Microbiology, vol.47, issue.2, pp.335-344, 2009.
DOI : 10.1128/JCM.01812-08

I. C. Shamputa, J. Lee, and C. Allix-béguec, Genetic Diversity of Mycobacterium tuberculosis Isolates from a Tertiary Care Tuberculosis Hospital in South Korea, Journal of Clinical Microbiology, vol.48, issue.2, pp.387-394, 2010.
DOI : 10.1128/JCM.02167-09

S. Niemann, R. Diel, G. Khechinashvili, M. Gegia, N. Mdivani et al., Mycobacterium tuberculosis Beijing Lineage Favors the Spread of Multidrug-Resistant Tuberculosis in the Republic of Georgia, Journal of Clinical Microbiology, vol.48, issue.10, pp.3544-3550, 2010.
DOI : 10.1128/JCM.00715-10

I. Mokrousov, V. Valcheva, N. Sovhozova, A. Aldashev, N. Rastogi et al., Penitentiary population of Mycobacterium tuberculosis in Kyrgyzstan: Exceptionally high prevalence of the Beijing genotype and its Russia-specific subtype, Infection, Genetics and Evolution, vol.9, issue.6, pp.1400-1405, 2009.
DOI : 10.1016/j.meegid.2009.07.007
URL : https://hal.archives-ouvertes.fr/pasteur-00694590

J. P. Mathuria, P. Sharma, P. Prakash, J. K. Samaria, V. M. Katoch et al., Role of spoligotyping and IS6110-RFLP in assessing genetic diversity of Mycobacterium tuberculosis in India, Infection, Genetics and Evolution, vol.8, issue.3, pp.346-351, 2008.
DOI : 10.1016/j.meegid.2008.02.005

P. Palittapongarnpim, P. Luangsook, S. Tartsuphaswadikul, C. Chuchottaworn, R. Prachaktam et al., Restriction fragment length polymorphism study of Mycobacterium tuberculosis in Thailand using IS6110 as probe, International Journal of Tuberculosis and Lung Disease, vol.1, issue.4, pp.370-376, 1997.

D. S. Chauhan, V. D. Sharma, and D. Parashar, Molecular typing of Mycobacterium tuberculosis isolates from different parts of India based on IS6110 element polymorphism using RFLP analysis, Indian Journal of Medical Research, vol.125, issue.4, pp.577-581, 2007.

P. F. Perizzolo, E. R. Costa, and A. W. Ribeiro, Characteristics of multidrug-resistant Mycobacterium tuberculosis in southern Brazil, Tuberculosis, vol.92, issue.1, pp.56-59, 2012.
DOI : 10.1016/j.tube.2011.09.008

T. C. Victor, E. M. Streicher, and C. Kewley, Spread of an emerging Mycobacterium tuberculosis drug-resistant strain in the Western Cape of South Africa, International Journal of Tuberculosis and Lung Disease, vol.11, issue.2, pp.195-201, 2007.

M. M. Gutacker, B. Mathema, and H. Soini, Strains from 4 Geographic Sites, The Journal of Infectious Diseases, vol.193, issue.1, pp.121-128, 2006.
DOI : 10.1086/498574

I. Parwati, R. Van-crevel, and D. Van-soolingen, Possible underlying mechanisms for successful emergence of the Mycobacterium tuberculosis Beijing genotype strains, The Lancet Infectious Diseases, vol.10, issue.2, pp.103-111, 2010.
DOI : 10.1016/S1473-3099(09)70330-5

Y. J. Sun, A. S. Lee, and S. Y. Wong, Genotype and phenotype relationships and transmission analysis of drug-resistant tuberculosis in Singapore, International Journal of Tuberculosis and Lung Disease, vol.11, issue.4, pp.436-442, 2007.

O. S. Toungoussova, P. Sandven, A. O. Mariandyshev, N. I. Nizovtseva, G. Bjune et al., Spread of Drug-Resistant Mycobacterium tuberculosis Strains of the Beijing Genotype in the Archangel Oblast, Russia, Journal of Clinical Microbiology, vol.40, issue.6, pp.1930-1937, 2002.
DOI : 10.1128/JCM.40.6.1930-1937.2002