A. Salah, Y. Kamarianakis, S. Chlif, N. Alaya, and P. Prastacos, Zoonotic cutaneous leishmaniasis in central Tunisia: spatio temporal dynamics, International Journal of Epidemiology, vol.36, issue.5, 2007.
DOI : 10.1093/ije/dym125
URL : https://hal.archives-ouvertes.fr/pasteur-00871665

W. Ghawar, A. Toumi, M. Snoussi, S. Chlif, and A. Zaatour, : Reservoirs of Zoonotic Cutaneous Leishmaniasis in Sidi Bouzid (Central Tunisia), Vector-Borne and Zoonotic Diseases, vol.11, issue.12, pp.1561-1568, 2011.
DOI : 10.1089/vbz.2011.0712

E. Nahal, H. Morsy, T. Bassili, W. , E. Missiry et al., Antibodies against three parasites of medical importance in Rattus sp. collected in Giza Governorate, Egypt, J Egypt Soc Parasitol, vol.12, pp.287-293, 1982.

G. Edrissian, M. Ghorbani, and G. Tahvildar-bidruni, Meriones persicus, another probable reservoir of zoonotic cutaneous leishmaniasis in Iran, Transactions of the Royal Society of Tropical Medicine and Hygiene, vol.69, issue.5-6, pp.517-519, 1975.
DOI : 10.1016/0035-9203(75)90113-3

S. Elbihari and Z. Kawasmeh, Possible reservoir host(s) of zoonotic cutaneous leishmaniasis in Al-Hassa oasis, Saudi Arabia, Annals of Tropical Medicine & Parasitology, vol.24, issue.5, pp.543-545, 1984.
DOI : 10.1080/00034983.1983.11811669

J. Githure, L. Schnur, L. Blancq, S. Hendricks, and L. , as new hosts of Leishmania major, Annals of Tropical Medicine & Parasitology, vol.8, issue.5, pp.501-507, 1986.
DOI : 10.1016/0035-9203(85)90259-7

A. Nadim and M. Faghih, The epidemiology of cutaneous leishmaniasis in the Isfahan province of Iran, Transactions of the Royal Society of Tropical Medicine and Hygiene, vol.62, issue.4, pp.534-542, 1968.
DOI : 10.1016/0035-9203(68)90140-5

B. Pourmohammadi, M. Motazedian, and M. Kalantari, in a new focus of human cutaneous leishmaniasis, in northern Iran, Annals of Tropical Medicine & Parasitology, vol.30, issue.2, pp.127-133, 2008.
DOI : 10.1590/S0074-02762002000600025

G. Wasserberg, Z. Abramsky, G. Anders, M. El-fari, and G. Schoenian, The ecology of cutaneous leishmaniasis in Nizzana, Israel: infection patterns in the reservoir host, and epidemiological implications, International Journal for Parasitology, vol.32, issue.2, pp.133-143, 2002.
DOI : 10.1016/S0020-7519(01)00326-5

Y. Schlein, A. Warburg, L. Schnur, and A. Gunders, Leishmaniasis in the Jordan Valley II. Sandflies and transmission in the central endemic area, Transactions of the Royal Society of Tropical Medicine and Hygiene, vol.76, issue.5, pp.582-586, 1982.
DOI : 10.1016/0035-9203(82)90215-2

Y. Schlein, A. Warburg, L. Schnur, L. Blancq, S. Gunders et al., Leishmaniasis in Israel: reservoir hosts, sandfly vectors and leishmanial strains in the Negev, Central Arava and along the Dead Sea, Transactions of the Royal Society of Tropical Medicine and Hygiene, vol.78, issue.4, pp.480-484, 1984.
DOI : 10.1016/0035-9203(84)90067-1

E. Fichet-calvet, I. Jomaa, B. Zaafouri, R. Ashford, and R. Ben-ismail, The spatio-temporal distribution of a rodent reservoir host of cutaneous leishmaniasis, Journal of Applied Ecology, vol.37, issue.4, pp.603-615, 2000.
DOI : 10.1046/j.1365-2664.2000.00522.x

J. Rioux, F. Petter, O. Akalay, G. Lanotte, and A. Ouazzani, [Meriones shawi (Duvernoy, 1842) [Rodentia, Gerbillidae] a reservoir of Leishmania major, Yakimoff and Schokhor, 1914 [Kinetoplastida, Trypanosomatidae] in South Morocco (author's transl), C R Seances Acad Sci III, vol.294, pp.515-517, 1982.

R. Ben-ismail, B. Rachid, M. Gradoni, L. Gramiccia, M. Helal et al., Zoonotic cutaneous leishmaniasis in Tunisia: study of the disease reservoir in the Douara area], Ann Soc Belg Med Trop, vol.67, pp.335-343, 1987.

R. Ben-ismail, S. Khaled, S. Makni, B. Rachid, and M. , Anti-leishmanial antibodies during natural infection of Psammomys obesus and Meriones shawi (Rodentia, Gerbillinae) by Leishmania major, Ann Soc Belg Med Trop, vol.69, pp.35-40, 1989.

E. Fichet-calvet, I. Jomaa, B. Ismail, R. Ashford, and R. , in Tunisia: interaction of host and parasite populations, Annals of Tropical Medicine & Parasitology, vol.44, issue.6, pp.593-603, 2003.
DOI : 10.1016/0035-9203(84)90179-2

M. Elfari, L. Schnur, M. Strelkova, C. Eisenberger, and R. Jacobson, Genetic and biological diversity among populations of Leishmania major from Central Asia, the Middle East and Africa, Microbes and Infection, vol.7, issue.1, pp.93-103, 2005.
DOI : 10.1016/j.micinf.2004.09.010

M. Tashakori, K. Kuhls, A. Jawabreh, I. Mauricio, and G. Schonian, Leishmania major: genetic heterogeneity of Iranian isolates by single-strand conformation polymorphism and sequence analysis of ribosomal DNA internal transcribed spacer, Acta Trop, vol.98, pp.52-58, 2006.

M. Bruford and R. Wayne, Microsatellites and their application to population genetic studies, Current Opinion in Genetics & Development, vol.3, issue.6, pp.939-943, 1993.
DOI : 10.1016/0959-437X(93)90017-J

V. Rougeron, D. Meeus, T. Hide, M. Waleckx, E. Dereure et al., A battery of 12 microsatellite markers for genetic analysis of the Leishmania ( Viannia) guyanensis complex, Parasitology, vol.164, issue.13, pp.1879-1884, 2010.
DOI : 10.2307/2408641

A. Al-jawabreh, S. Diezmann, M. Muller, T. Wirth, and L. Schnur, Identification of geographically distributed sub-populations of Leishmania (Leishmania) major by microsatellite analysis, BMC Evolutionary Biology, vol.8, issue.1, p.183, 2008.
DOI : 10.1186/1471-2148-8-183

T. Mahnaz, A. Jawabreh, K. Kuhls, and G. Schonian, Multilocus microsatellite typing shows three different genetic clusters of Leishmania major in Iran, Microbes and Infection, vol.13, issue.11, pp.937-942, 2011.
DOI : 10.1016/j.micinf.2011.05.005

W. Ghawar, M. Snoussi, N. Hamida, A. Boukthir, and R. Yazidi, in Tunisia, Vector-Borne and Zoonotic Diseases, vol.11, issue.11, pp.1507-1509, 2011.
DOI : 10.1089/vbz.2011.0673
URL : https://hal.archives-ouvertes.fr/hal-01356536

N. Tai, O. Osman, M. Fari, W. Presber, and G. Schonian, Genetic heterogeneity of ribosomal internal transcribed spacer in clinical samples of Leishmania donovani spotted on filter paper as revealed by single-strand conformation polymorphisms and sequencing, Transactions of the Royal Society of Tropical Medicine and Hygiene, vol.94, issue.5, pp.575-579, 2000.
DOI : 10.1016/S0035-9203(00)90093-2

E. Tai, N. Fari, M. , M. I. Miles, M. Oskam et al., Leishmania donovani: Intraspecific Polymorphisms of Sudanese Isolates Revealed by PCR-based Analyses and DNA Sequencing, Experimental Parasitology, vol.97, issue.1, pp.35-44, 2001.
DOI : 10.1006/expr.2001.4592

G. Schonian, A. Nasereddin, N. Dinse, C. Schweynoch, and H. Schallig, PCR diagnosis and characterization of Leishmania in local and imported clinical samples, Diagnostic Microbiology and Infectious Disease, vol.47, issue.1, pp.349-358, 2003.
DOI : 10.1016/S0732-8893(03)00093-2

T. Gelanew, K. Kuhls, Z. Hurissa, T. Weldegebreal, and W. Hailu, Inference of Population Structure of Leishmania donovani Strains Isolated from Different Ethiopian Visceral Leishmaniasis Endemic Areas, PLoS Neglected Tropical Diseases, vol.37, issue.Pt 4, p.889, 2010.
DOI : 10.1371/journal.pntd.0000889.s005

G. Schonian, K. Kuhls, and I. Mauricio, Molecular approaches for a better understanding of the epidemiology and population genetics of Leishmania, Parasitology, vol.73, issue.04, pp.405-425, 2011.
DOI : 10.1126/science.1169464

D. Dieringer and C. Schlotterer, Two Distinct Modes of Microsatellite Mutation Processes: Evidence From the Complete Genomic Sequences of Nine Species, Genome Research, vol.13, issue.10, pp.2242-2251, 2003.
DOI : 10.1101/gr.1416703

K. Tamura, J. Dudley, M. Nei, and S. Kumar, MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0, Molecular Biology and Evolution, vol.24, issue.8, pp.1596-1599, 2007.
DOI : 10.1093/molbev/msm092

S. Kumar, M. Nei, J. Dudley, and K. Tamura, MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences, Briefings in Bioinformatics, vol.9, issue.4, pp.299-306, 2008.
DOI : 10.1093/bib/bbn017

J. Pritchard, M. Stephens, and P. Donnelly, Inference of population structure using multilocus genotype data, Genetics, vol.155, pp.945-959, 2000.

G. Schonian, I. Mauricio, M. Gramiccia, C. Canavate, and M. Boelaert, Leishmaniases in the Mediterranean in the era of molecular epidemiology, Trends in Parasitology, vol.24, issue.3, pp.135-142, 2008.
DOI : 10.1016/j.pt.2007.12.006

N. Chargui, A. Amro, N. Haouas, G. Schonian, and H. Babba, Population structure of Tunisian Leishmania infantum and evidence for the existence of hybrids and gene flow between genetically different populations, International Journal for Parasitology, vol.39, issue.7, pp.801-811, 2009.
DOI : 10.1016/j.ijpara.2008.11.016

M. Alam, C. Haralambous, K. Kuhls, E. Gouzelou, and D. Sgouras, The paraphyletic composition of Leishmania donovani zymodeme MON-37 revealed by multilocus microsatellite typing, Microbes and Infection, vol.11, issue.6-7, pp.707-715, 2009.
DOI : 10.1016/j.micinf.2009.04.009
URL : https://hal.archives-ouvertes.fr/pasteur-00734694

R. Piarroux, M. Fontes, R. Perasso, F. Gambarelli, and C. Joblet, Phylogenetic relationships between Old World Leishmania strains revealed by analysis of a repetitive DNA sequence, Molecular and Biochemical Parasitology, vol.73, issue.1-2, pp.249-252, 1995.
DOI : 10.1016/0166-6851(95)00097-K

V. Rougeron, E. Waleckx, M. Hide, T. Dem, and J. Arevalo, PERMANENT GENETIC RESOURCES: A set of 12 microsatellite loci for genetic studies of Leishmania braziliensis, Molecular Ecology Resources, vol.190, issue.1-109, pp.351-353, 2008.
DOI : 10.1111/j.1471-8286.2007.01953.x

G. Schonian, L. Schnur, M. Fari, L. Oskam, and A. Kolesnikov, Genetic heterogeneity in the species Leishmania tropica revealed by different PCR-based methods, Transactions of the Royal Society of Tropical Medicine and Hygiene, vol.95, issue.2, pp.217-224, 2001.
DOI : 10.1016/S0035-9203(01)90173-7

O. Hamarsheh, W. Presber, M. Yaghoobi-ershadi, A. Amro, and A. Jawabreh, as revealed by microsatellite variation, Medical and Veterinary Entomology, vol.30, issue.1, pp.69-77, 2009.
DOI : 10.1111/j.1365-2915.2008.00784.x
URL : https://hal.archives-ouvertes.fr/pasteur-01375174

F. Pratlong, J. Rioux, J. Dereure, J. Mahjour, and M. Gallego, au Maroc. IV ??? Diversit?? isozymique intrafocale, Leishmania tropica in Morocco. IV?Intrafocal enzyme diversity], pp.100-104, 1991.
DOI : 10.1051/parasite/1991663100