Recent advances in the molecular epidemiology and control of human enterovirus 71 infection, Current Opinion in Virology, vol.2, issue.2, pp.199-205, 2012. ,
DOI : 10.1016/j.coviro.2012.02.009
Enterovirus 71: emergence of the new poliomyelitis, South Afr J Epidemiol Infect, vol.24, pp.5-8, 2009. ,
Clinical features, diagnosis, and management of enterovirus 71, The Lancet Neurology, vol.9, issue.11, pp.1097-1105, 2010. ,
DOI : 10.1016/S1474-4422(10)70209-X
Virology, epidemiology, pathogenesis, and control of enterovirus 71, The Lancet Infectious Diseases, vol.10, issue.11, pp.778-790, 2010. ,
DOI : 10.1016/S1473-3099(10)70194-8
Immunogenicity, Safety, and Immune persistence of A Novel Inactivated Human Enterovirus 71 (EV71) Vaccine: A Phase II, Randomized, Double-Blind, Placebo-Controlled trial, J Infect Dis, 2013. ,
Efficacy, safety, and immunology of an inactivated alum-adjuvant enterovirus 71 vaccine in children in China: a multicentre, randomised, double-blind, placebo-controlled, phase 3 trial, The Lancet, vol.381, issue.9882, pp.2024-2032, 2013. ,
DOI : 10.1016/S0140-6736(13)61049-1
Molecular evolution of the human enteroviruses: correlation of serotype with VP1 sequence and application to picornavirus classification, J Virol, vol.73, pp.1941-1948, 1999. ,
Evaluation of seroneutralization and molecular diagnostic methods for echovirus identification, Diagnostic Microbiology and Infectious Disease, vol.53, issue.2, pp.113-119, 2005. ,
DOI : 10.1016/j.diagmicrobio.2005.06.016
Outbreak of hand, foot and mouth disease/herpangina associated with coxsackievirus A6 and A10 infections in 2010, France: a large citywide, prospective observational study, Clinical Microbiology and Infection, vol.18, issue.5, pp.110-118, 2012. ,
DOI : 10.1111/j.1469-0691.2012.03789.x
Typing of human enteroviruses by partial sequencing of VP1, J Clin Microbiol, vol.37, pp.1288-1293, 1999. ,
Molecular epidemiology and evolution of enterovirus 71 strains isolated from 1970 to 1998, J Virol, vol.73, pp.9969-9975, 1999. ,
Genetic analysis of the VP1 region of enterovirus 71 reveals the emergence of genotype A in central China in 2008, Virus Genes, vol.9, issue.1, pp.1-4, 2008. ,
DOI : 10.1007/s11262-010-0472-9
Phylogenetic Analysis of Enterovirus 71 Circulating in Beijing, China from 2007 to 2009, PLoS ONE, vol.49, issue.(9), p.56318, 2007. ,
DOI : 10.1371/journal.pone.0056318.s001
Enterovirus 71 isolated from a case of acute flaccid paralysis in India represents a new genotype, Current Science, vol.84, pp.1350-1353, 2003. ,
Molecular Characterization of Human Enteroviruses in the Central African Republic: Uncovering Wide Diversity and Identification of a New Human Enterovirus A71 Genogroup, Journal of Clinical Microbiology, vol.50, issue.5, pp.1650-1658, 2012. ,
DOI : 10.1128/JCM.06657-11
High Frequency and Diversity of Species C Enteroviruses in Cameroon and Neighboring Countries, Journal of Clinical Microbiology, vol.51, issue.3, pp.759-770, 2013. ,
DOI : 10.1128/JCM.02119-12
MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods, Molecular Biology and Evolution, vol.28, issue.10, pp.2731-2739, 2011. ,
DOI : 10.1093/molbev/msr121
Full-length human immunodeficiency virus type 1 genomes from subtype Cinfected seroconverters in India, with evidence of intersubtype recombination, J Virol, vol.73, pp.152-160, 1999. ,
Relaxed Phylogenetics and Dating with Confidence, PLoS Biology, vol.20, issue.5, p.88, 2006. ,
DOI : 10.1371/journal.pbio.0040088.sd001
BEAST: Bayesian evolutionary analysis by sampling trees, BMC Evolutionary Biology, vol.7, issue.1, p.214, 2007. ,
DOI : 10.1186/1471-2148-7-214
Choosing Appropriate Substitution Models for the Phylogenetic Analysis of Protein-Coding Sequences, Molecular Biology and Evolution, vol.23, issue.1, pp.7-9, 2006. ,
DOI : 10.1093/molbev/msj021
Bayesian Coalescent Inference of Past Population Dynamics from Molecular Sequences, Molecular Biology and Evolution, vol.22, issue.5, pp.1185-1192, 2005. ,
DOI : 10.1093/molbev/msi103
Smooth Skyride through a Rough Skyline: Bayesian Coalescent-Based Inference of Population Dynamics, Molecular Biology and Evolution, vol.25, issue.7, pp.1459-1471, 2008. ,
DOI : 10.1093/molbev/msn090
Bayes Factors, Journal of the American Statistical Association, vol.2, issue.430, pp.773-795, 1995. ,
DOI : 10.1080/01621459.1995.10476572
Bayesian Selection of Continuous-Time Markov Chain Evolutionary Models, Molecular Biology and Evolution, vol.18, issue.6, pp.1001-1013, 2001. ,
DOI : 10.1093/oxfordjournals.molbev.a003872
Genetic analysis of enterovirus 71 isolated from fatal and non-fatal cases of hand, foot and mouth disease during an epidemic in Taiwan, 1998, Virus Research, vol.68, issue.2, pp.127-136, 1998. ,
DOI : 10.1016/S0168-1702(00)00162-3
Genetic Relationship between Cocirculating Human Enteroviruses Species C, PLoS ONE, vol.6, issue.Pt 10, p.24823, 2011. ,
DOI : 10.1371/journal.pone.0024823.t001
URL : https://hal.archives-ouvertes.fr/pasteur-00835576
Natural Recombination Event within the Capsid Genomic Region Leading to a Chimeric Strain of Human Enterovirus B, Journal of Virology, vol.81, issue.17, pp.8944-8952, 2007. ,
DOI : 10.1128/JVI.00180-07
Recombination in circulating Human enterovirus B: independent evolution of structural and non-structural genome regions, Journal of General Virology, vol.86, issue.12, pp.3281-3290, 2005. ,
DOI : 10.1099/vir.0.81264-0
RNA Recombination Plays a Major Role in Genomic Change during Circulation of Coxsackie B Viruses, Journal of Virology, vol.78, issue.6, pp.2948-2955, 2004. ,
DOI : 10.1128/JVI.78.6.2948-2955.2004
Frequency and Dynamics of Recombination within Different Species of Human Enteroviruses, Journal of Virology, vol.80, issue.1, pp.483-493, 2006. ,
DOI : 10.1128/JVI.80.1.483-493.2006
Antigenic Diversity of Enteroviruses Associated with Nonpolio Acute Flaccid Paralysis, India, 2007???2009, Emerging Infectious Diseases, vol.18, issue.11, pp.1833-1840, 2007. ,
DOI : 10.3201/eid1811.111457
Recombination between Poliovirus and Coxsackie A Viruses of Species C: A Model of Viral Genetic Plasticity and Emergence, Viruses, vol.3, issue.12, pp.1460-1484, 2011. ,
DOI : 10.3390/v3081460
Recombination among picornaviruses, Reviews in Medical Virology, vol.24, issue.Pt 3, pp.327-337, 2010. ,
DOI : 10.1002/rmv.660
Genetic characterization of EV71 isolates from 2004 to 2010 reveals predominance and persistent circulation of the newly proposed genotype D and recent emergence of a distinct lineage of subgenotype C2 in Hong Kong, Virology Journal, vol.10, issue.1, p.222, 2013. ,
DOI : 10.1186/1471-2148-6-29
Evolutionary Genetics of Human Enterovirus 71: Origin, Population Dynamics, Natural Selection, and Seasonal Periodicity of the VP1 Gene, Journal of Virology, vol.84, issue.7, pp.3339-3350, 2010. ,
DOI : 10.1128/JVI.01019-09
Evolutionary trajectory of the VP1 gene of human enterovirus 71 genogroup B and C viruses, Journal of General Virology, vol.91, issue.8, pp.1949-1958, 2010. ,
DOI : 10.1099/vir.0.019695-0
Phylogenetic evidence for a recent spread of two populations of human enterovirus 71 in European countries, Journal of General Virology, vol.91, issue.9, pp.2263-2277, 2010. ,
DOI : 10.1099/vir.0.021741-0