Polar Flagellar Biosynthesis and a Regulator of Flagellar Number Influence Spatial Parameters of Cell Division in Campylobacter jejuni, PLoS Pathogens, vol.235, issue.Pt6, 2011. ,
DOI : 10.1371/journal.ppat.1002420.s008
The FleQ protein from Pseudomonas aeruginosa functions as both a repressor and an activator to control gene expression from the pel operon promoter in response to c-di-GMP, Nucleic Acids Research, vol.40, issue.15, pp.7207-7218, 2012. ,
DOI : 10.1093/nar/gks384
An experimental test of evolutionary trade-offs during temperature adaptation, Proc. Natl. Acad. Sci. USA, pp.8649-8654, 2007. ,
DOI : 10.1073/pnas.0702117104
Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli, Proc. Natl. Acad. Sci. USA 105, pp.7899-7906, 2008. ,
DOI : 10.1073/pnas.0803151105
from biofilms, Molecular Microbiology, vol.60, issue.5, pp.1210-1223, 2005. ,
DOI : 10.1111/j.1365-2958.2005.04743.x
Exploiting social evolution in biofilms, Current Opinion in Microbiology, vol.16, issue.2, pp.207-212, 2013. ,
DOI : 10.1016/j.mib.2013.01.003
The Lon Protease Is Essential for Full Virulence in Pseudomonas aeruginosa, PLoS ONE, vol.166, issue.11, p.49123, 2012. ,
DOI : 10.1371/journal.pone.0049123.t002
Rhamnolipids Modulate Swarming Motility Patterns of Pseudomonas aeruginosa, Journal of Bacteriology, vol.187, issue.21, pp.7351-7361, 2005. ,
DOI : 10.1128/JB.187.21.7351-7361.2005
Inverse Regulation of Biofilm Formation and Swarming Motility by Pseudomonas aeruginosa PA14, Journal of Bacteriology, vol.189, issue.9, pp.3603-3612, 2007. ,
DOI : 10.1128/JB.01685-06
Transcriptional Response of Mucoid Pseudomonas aeruginosa to Human Respiratory Mucus, mBio, vol.3, issue.6, pp.410-00412, 2013. ,
DOI : 10.1128/mBio.00410-12
Optimization of Gene Expression through Divergent Mutational Paths, Cell Reports, vol.1, issue.2, pp.133-140, 2012. ,
DOI : 10.1016/j.celrep.2011.12.003
Diminishing Returns Epistasis Among Beneficial Mutations Decelerates Adaptation, Science, vol.332, issue.6034, pp.1190-1192, 2011. ,
DOI : 10.1126/science.1203799
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3244271
Causes and evolutionary significance of genetic convergence, Trends in Genetics, vol.26, issue.9, pp.400-405, 2010. ,
DOI : 10.1016/j.tig.2010.06.005
URL : https://hal.archives-ouvertes.fr/hal-00601913
Bacterial Biofilms: A Common Cause of Persistent Infections, Science, vol.284, issue.5418, pp.1318-1322, 1999. ,
DOI : 10.1126/science.284.5418.1318
Interaction of the Antiactivator FleN with the Transcriptional Activator FleQ Regulates Flagellar Number in Pseudomonas aeruginosa, Journal of Bacteriology, vol.183, issue.22, pp.6636-6644, 2001. ,
DOI : 10.1128/JB.183.22.6636-6644.2001
fleN, a Gene That Regulates Flagellar Number in Pseudomonas aeruginosa, Journal of Bacteriology, vol.182, issue.2, pp.357-364, 2000. ,
DOI : 10.1128/JB.182.2.357-364.2000
A four-tiered transcriptional regulatory circuit controls flagellar biogenesis in Pseudomonas aeruginosa, Molecular Microbiology, vol.24, issue.3, pp.809-824, 2003. ,
DOI : 10.1046/j.1365-2958.2003.03740.x
Rapid evolutionary innovation during an Archaean genetic expansion, Nature, vol.15, issue.7328, pp.93-96, 2011. ,
DOI : 10.1038/nature09649
URL : http://hdl.handle.net/1721.1/61263
Biosurfactant production by a soil pseudomonas strain growing on polycyclic aromatic hydrocarbons, Appl. Environ. Microbiol, vol.62, pp.1908-1912, 1996. ,
rhlA is required for the production of a novel biosurfactant promoting swarming motility in Pseudomonas aeruginosa: 3-(3-hydroxyalkanoyloxy)alkanoic acids (HAAs), the precursors of rhamnolipids, Microbiology, vol.149, 2003. ,
The co-evolution of life and Earth, Current Biology, vol.16, issue.11, pp.395-400, 2006. ,
DOI : 10.1016/j.cub.2006.05.017
Experimental Evolution of Legionella pneumophila in Mouse Macrophages Leads to Strains with Altered Determinants of Environmental Survival, PLoS Pathogens, vol.2, issue.103, 2012. ,
DOI : 10.1371/journal.ppat.1002731.s001
Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale, Nature Genetics, vol.99, issue.12, pp.1406-1412, 2006. ,
DOI : 10.1038/ng1906
Quantification of biofilm structures by the novel computer program comstat, Microbiology, vol.146, issue.10, pp.2395-2407, 2000. ,
DOI : 10.1099/00221287-146-10-2395
Bacterial competition: surviving and thriving in the microbial jungle, Nature Reviews Microbiology, vol.44, issue.1, pp.15-25, 2010. ,
DOI : 10.1038/nrmicro2259
Rapid necrotic killing of polymorphonuclear leukocytes is caused by quorum-sensing-controlled production of rhamnolipid by Pseudomonas aeruginosa, Microbiology, vol.153, issue.5, pp.1329-1338, 2007. ,
DOI : 10.1099/mic.0.2006/003863-0
Life and the Evolution of Earth's Atmosphere, Science, vol.296, issue.5570, pp.1066-1068, 2002. ,
DOI : 10.1126/science.1071184
Spatial and numerical regulation of flagellar biosynthesis in polarly flagellated bacteria, Molecular Microbiology, vol.106, issue.4, pp.655-663, 2013. ,
DOI : 10.1111/mmi.12221
A field guide to bacterial swarming motility, Nature Reviews Microbiology, vol.33, issue.9, pp.634-644, 2010. ,
DOI : 10.1038/nrmicro2405
Swarming of Pseudomonas aeruginosa Is Dependent on Cell-to-Cell Signaling and Requires Flagella and Pili, Journal of Bacteriology, vol.182, issue.21, pp.5990-5996, 2000. ,
DOI : 10.1128/JB.182.21.5990-5996.2000
Microbial sciences: The superficial life of microbes, Nature, vol.176, issue.7091, pp.300-302, 2006. ,
DOI : 10.1038/nature03925
BifA, a Cyclic-Di-GMP Phosphodiesterase, Inversely Regulates Biofilm Formation and Swarming Motility by Pseudomonas aeruginosa PA14, Journal of Bacteriology, vol.189, issue.22, pp.8165-8178, 2007. ,
DOI : 10.1128/JB.00586-07
Cyclic-di-GMP-Mediated Repression of Swarming Motility by Pseudomonas aeruginosa: the pilY1 Gene and Its Impact on Surface-Associated Behaviors, Journal of Bacteriology, vol.192, issue.12, pp.2950-2964, 2010. ,
DOI : 10.1128/JB.01642-09
Regulation of Polar Flagellar Number by the flhF and flhG Genes in Vibrio alginolyticus, Journal of Biochemistry, vol.139, issue.1, pp.113-121, 2006. ,
DOI : 10.1093/jb/mvj010
Swarming motility: a multicellular behaviour conferring antimicrobial resistance, Environmental Microbiology, vol.362, issue.Suppl., pp.126-136, 2009. ,
DOI : 10.1111/j.1462-2920.2008.01747.x
Mini-Tn7 transposons for site-specific tagging of bacteria with fluorescent proteins, Environmental Microbiology, vol.62, issue.7, pp.726-732, 2004. ,
DOI : 10.1016/0378-1119(95)00732-6
Promoters largely determine the efficiency of repressor action., Proc. Natl. Acad. Sci. USA, pp.8973-8977, 1988. ,
DOI : 10.1073/pnas.85.23.8973
A cyclic-di-GMP receptor required for bacterial exopolysaccharide production, Molecular Microbiology, vol.265, issue.6, pp.1474-1484, 2007. ,
DOI : 10.1016/S0014-5793(97)01202-7
Evolutionary Response of Escherichia coli to Thermal Stress, The American Naturalist, vol.142, pp.47-64, 1993. ,
DOI : 10.1086/285522
Long-Term Experimental Evolution in Escherichia coli. I. Adaptation and Divergence During 2,000 Generations, The American Naturalist, vol.138, issue.6, pp.1315-1341, 1991. ,
DOI : 10.1086/285289
URL : https://hal.archives-ouvertes.fr/hal-00171694
Timing and Localization of Rhamnolipid Synthesis Gene Expression in Pseudomonas aeruginosa Biofilms, Journal of Bacteriology, vol.187, issue.1, 2005. ,
DOI : 10.1128/JB.187.1.37-44.2005
A Forward-Genetic Screen and Dynamic Analysis of Lambda Phage Host-Dependencies Reveals an Extensive Interaction Network and a New Anti-Viral Strategy, PLoS Genetics, vol.97, issue.7, p.1001017, 2010. ,
DOI : 10.1371/journal.pgen.1001017.s008
Social evolution in multispecies biofilms, Proc. Natl. Acad. Sci. USA, pp.10839-10846, 2011. ,
DOI : 10.1073/pnas.1100292108
Imaging and Analysis of Pseudomonas aeruginosa Swarming and Rhamnolipid Production, Applied and Environmental Microbiology, vol.77, issue.23, pp.8310-8317, 2011. ,
DOI : 10.1128/AEM.06644-11
FlhF Is Required for Swimming and Swarming in Pseudomonas aeruginosa, Journal of Bacteriology, vol.188, issue.19, pp.6995-7004, 2006. ,
DOI : 10.1128/JB.00790-06
Swarming motility, secretion of type 3 effectors and biofilm formation phenotypes exhibited within a large cohort of Pseudomonas aeruginosa clinical isolates, Journal of Medical Microbiology, vol.59, issue.5, pp.511-520, 2010. ,
DOI : 10.1099/jmm.0.017715-0
A fitness trade-off between local competition and dispersal in Vibrio cholerae biofilms, Proc. Natl. Acad. Sci. USA, pp.14181-14185, 2011. ,
DOI : 10.1073/pnas.1111147108
Emergence of Spatial Structure in Cell Groups and the Evolution of Cooperation, PLoS Computational Biology, vol.31, issue.3, 2010. ,
DOI : 10.1371/journal.pcbi.1000716.s006
High Frequency of Hypermutable Pseudomonas aeruginosa in Cystic Fibrosis Lung Infection, Science, vol.288, issue.5469, pp.1251-1254, 2000. ,
DOI : 10.1126/science.288.5469.1251
biofilm development, Molecular Microbiology, vol.18, issue.2, pp.295-304, 1998. ,
DOI : 10.1046/j.1365-2958.1998.01062.x
Adaptive Mutations in Bacteria: High Rate and Small Effects, Science, vol.317, issue.5839, pp.813-815, 2007. ,
DOI : 10.1126/science.1142284
Inorganic polyphosphate is needed for swimming, swarming, and twitching motilities of Pseudomonas aeruginosa, Proc. Natl. Acad. Sci. USA 97, pp.4885-4890, 2000. ,
DOI : 10.1073/pnas.060030097
The GTPase Activity of FlhF Is Dispensable for Flagellar Localization, but Not Motility, in Pseudomonas aeruginosa, Journal of Bacteriology, vol.195, issue.5, pp.1051-1060, 2013. ,
DOI : 10.1128/JB.02013-12
Saccharomyces cerevisiae-Based Molecular Tool Kit for Manipulation of Genes from Gram-Negative Bacteria, Applied and Environmental Microbiology, vol.72, issue.7, pp.5027-5036, 2006. ,
DOI : 10.1128/AEM.00682-06
Evolutionary Trade-Offs, Pareto Optimality, and the Geometry of Phenotype Space, Science, vol.336, issue.6085, pp.1157-1160, 2012. ,
DOI : 10.1126/science.1217405
The impact of quorum sensing and swarming motility on Pseudomonas aeruginosa biofilm formation is nutritionally conditional, Molecular Microbiology, vol.179, issue.5, pp.1264-1277, 2006. ,
DOI : 10.1016/0378-1119(94)90237-2
Anaerobic Microbial Dehalogenation, Annual Review of Microbiology, vol.58, issue.1, pp.43-73, 2004. ,
DOI : 10.1146/annurev.micro.58.030603.123600
Genetic adaptation by Pseudomonas aeruginosa to the airways of cystic fibrosis patients, Proc. Natl. Acad. Sci. USA 103, pp.8487-8492, 2006. ,
DOI : 10.1073/pnas.0602138103
Tracking a Hospital Outbreak of Carbapenem-Resistant Klebsiella pneumoniae with Whole-Genome Sequencing, Science Translational Medicine, vol.4, issue.148, pp.148-116, 2012. ,
DOI : 10.1126/scitranslmed.3004129
Swarming of Pseudomonas aeruginosa PAO1 without differentiation into elongated hyperflagellates on hard agar minimal medium, FEMS Microbiology Letters, vol.280, issue.2, pp.169-175, 2008. ,
DOI : 10.1111/j.1574-6968.2007.01057.x
The Bacteria Fight Back, Science, vol.321, issue.5887, pp.356-361, 2008. ,
DOI : 10.1126/science.321.5887.356
SELECTION EXPERIMENTS REVEAL TRADE-OFFS BETWEEN SWIMMING AND TWITCHING MOTILITIES IN???PSEUDOMONAS AERUGINOSA, Evolution, vol.104, issue.11, pp.3060-3069, 2011. ,
DOI : 10.1111/j.1558-5646.2011.01376.x
The Molecular Diversity of Adaptive Convergence, Science, vol.335, issue.6067, pp.457-461, 2012. ,
DOI : 10.1126/science.1212986
swarming motility assays, Journal of Basic Microbiology, vol.9, issue.6, pp.509-515, 2008. ,
DOI : 10.1002/jobm.200800030
Gene expression in Pseudomonas aeruginosa swarming motility, BMC Genomics, vol.11, issue.1, 2010. ,
DOI : 10.1186/1471-2164-11-587
Self-produced extracellular stimuli modulate the Pseudomonas aeruginosa swarming motility behaviour, Environmental Microbiology, vol.4, issue.10, pp.2622-2630, 2007. ,
DOI : 10.1016/0378-1119(94)90237-2
High-resolution time series of Pseudomonas aeruginosa gene expression and rhamnolipid secretion through growth curve synchronization, BMC Microbiology, vol.11, issue.1, p.140, 2011. ,
DOI : 10.1128/JB.01583-07
General and inducible hypermutation facilitate parallel adaptation in Pseudomonas aeruginosa despite divergent mutation spectra, Proc. Natl. Acad. Sci. USA, pp.13680-13685, 2012. ,
DOI : 10.1073/pnas.1205357109
Pseudomonas Genome Database: improved comparative analysis and population genomics capability for Pseudomonas genomes, Database issue), pp.596-600, 2011. ,
DOI : 10.1093/nar/gkq869
Tests of parallel molecular evolution in a long-term experiment with Escherichia coli, Proc. Natl. Acad. Sci. USA 103, pp.9107-9112, 2006. ,
DOI : 10.1073/pnas.0602917103
URL : https://hal.archives-ouvertes.fr/hal-00171702
Static growth of mucoid Pseudomonas aeruginosa selects for non-mucoid variants that have acquired flagellum-dependent motility a, Microbiology, vol.148, issue.11, pp.3423-3430, 2002. ,
DOI : 10.1099/00221287-148-11-3423
Cooperation and conflict in microbial biofilms, Proc. Natl. Acad. Sci. USA, pp.876-881, 2007. ,
DOI : 10.1073/pnas.0607651104
Social Evolution of Spatial Patterns in Bacterial Biofilms: When Conflict Drives Disorder, The American Naturalist, vol.174, issue.1, pp.1-12, 2009. ,
DOI : 10.1086/599297
A molecular mechanism that stabilizes cooperative secretions in Pseudomonas aeruginosa, Molecular Microbiology, vol.74, issue.1, pp.166-179, 2011. ,
DOI : 10.1111/j.1365-2958.2010.07436.x
Statistical image analysis reveals features affecting fates of Myxococcus xanthus developmental aggregates, Proc. Natl. Acad. Sci. USA, pp.5915-5920, 2011. ,
DOI : 10.1073/pnas.1018383108
Evolutionary dynamics of bacteria in a human host environment, Proc. Natl. Acad. Sci. USA, pp.7481-7486, 2011. ,
DOI : 10.1073/pnas.1018249108
Swarming of Pseudomonas aeruginosa Is Controlled by a Broad Spectrum of Transcriptional Regulators, Including MetR, Journal of Bacteriology, vol.191, issue.18, pp.5592-5602, 2009. ,
DOI : 10.1128/JB.00157-09
The Sensor Kinase CbrA Is a Global Regulator That Modulates Metabolism, Virulence, and Antibiotic Resistance in Pseudomonas aeruginosa, Journal of Bacteriology, vol.193, issue.4, pp.918-931, 2011. ,
DOI : 10.1128/JB.00911-10
Mucin Promotes Rapid Surface Motility in Pseudomonas aeruginosa, mBio, vol.3, issue.3, pp.73-85, 2012. ,
DOI : 10.1128/mBio.00073-12
Parallel Molecular Evolution in an Herbivore Community, Science, vol.337, issue.6102, pp.1634-1637, 2012. ,
DOI : 10.1126/science.1226630