S. F. Altschul, W. Gish, W. Miller, E. W. Myers, and D. J. Lipman, Basic local alignment search tool, Journal of Molecular Biology, vol.215, issue.3, pp.403-410, 1990.
DOI : 10.1016/S0022-2836(05)80360-2

S. Assonov, C. Brenninkmeijer, P. Jöckel, R. Mulvaney, S. Bernard et al., Evidence for a CO increase in the SH during the 20th century based on firn air samples from Berkner Island, Antarctica, Atmospheric Chemistry and Physics, vol.7, issue.2, pp.295-308, 2007.
DOI : 10.5194/acp-7-295-2007
URL : https://hal.archives-ouvertes.fr/hal-00328478

F. G. Blanchet, P. Legendre, and D. Borcard, FORWARD SELECTION OF EXPLANATORY VARIABLES, Ecology, vol.8, issue.9, pp.2623-2632, 2008.
DOI : 10.2307/1268227

D. Borcard, F. Gillet, and P. Legendre, Numerical Ecology with R, 2011.
DOI : 10.1007/978-1-4419-7976-6
URL : https://hal.archives-ouvertes.fr/hal-00530195

R. Brankatschk, N. Bodenhausen, J. Zeyer, and H. Bürgmann, Simple Absolute Quantification Method Correcting for Quantitative PCR Efficiency Variations for Microbial Community Samples, Applied and Environmental Microbiology, vol.78, issue.12, pp.4481-4489, 2012.
DOI : 10.1128/AEM.07878-11

A. S. Chan and P. A. Steudler, Carbon monoxide uptake kinetics in unamended and long-term nitrogen-amended temperate forest soils, FEMS Microbiology Ecology, vol.57, issue.3, 2006.
DOI : 10.1111/j.1574-6941.2006.00127.x

L. Y. Chan, W. L. Lau, S. C. Zou, Z. X. Cao, L. et al., Exposure level of carbon monoxide and respirable suspended particulate in public transportation modes while commuting in urban area of Guangzhou, China, Atmospheric Environment, vol.36, issue.38, pp.5831-5840, 2002.
DOI : 10.1016/S1352-2310(02)00687-8

A. Chevalier, F. Gheusi, J. Attié, R. Delmas, R. Zbinden et al., Carbon monoxide observations from ground stations in France and Europe and long trends in the free troposphere, Atmospheric Chemistry and Physics Discussions, vol.8, issue.1, pp.3313-3356, 2008.
DOI : 10.5194/acpd-8-3313-2008
URL : https://hal.archives-ouvertes.fr/hal-00328308

R. Conrad, R. Conrad, O. Meyer, and W. Seiler, Compensation concentration as critical variable for regulating the flux of trace gases between soil and atmosphere Role of carboxydobacteria in consumption of atmospheric carbon monoxide by soil, Biogeochemistry Appl. Environ. Microbiol, vol.27, issue.42, pp.155-170, 1981.

R. Conrad, W. P. Seiler, S. P. Chowdhury, L. Hesse, C. et al., Influence of temperature, moisture, and organic carbon on the flux of H 2 and CO between soil and atmosphere: field studies in subtropical regions Co-localization of atmospheric H 2 oxidation activity and high affinity H 2 -oxidizing bacteria in non-axenic soil and sterile soil amended with Streptomyces sp, J. Geophys. Res. Atmos. PCB7. Soil Biol. Biochem, vol.90, issue.43, pp.5699-5709, 1985.

M. Cunliffe, Correlating carbon monoxide oxidation with cox genes in the abundant Marine Roseobacter Clade, The ISME Journal, vol.62, issue.4, pp.685-691, 2010.
DOI : 10.1007/BF01131598

J. S. Daniel and S. W. Solomon, On the climate forcing of carbon monoxide, Journal of Geophysical Research: Atmospheres, vol.25, issue.D11, pp.13249-13260, 1998.
DOI : 10.1029/98JD00822

N. J. Decoste, V. J. Gadkar, and M. Filion, Relative and Absolute Quantitative Real-Time PCR-Based Quantifications of hcnC and phlD Gene Transcripts in Natural Soil Spiked with Pseudomonas sp. Strain LBUM300, Applied and Environmental Microbiology, vol.77, issue.1, pp.41-47, 1128.
DOI : 10.1128/AEM.01387-10

D. M. Deer, K. A. Lampel, N. D. González-escalona, W. Borken, H. L. Drake et al., A versatile internal control for use as DNA in real-time PCR and as RNA in real-time reverse transcription PCR assays, Letters in Applied Microbiology, vol.71, issue.4, pp.366-372, 1128.
DOI : 10.1111/j.1472-765X.2010.02804.x

L. Derendorp, J. B. Quist, R. Holzinger, and T. And-röckmann, Emissions of H2 and CO from leaf litter of Sequoiadendron giganteum, and their dependence on UV radiation and temperature, Atmospheric Environment, vol.45, issue.39, pp.7520-7524, 2011.
DOI : 10.1016/j.atmosenv.2011.09.044

P. H. Dixon, L. Gremer, R. Kiefersauer, R. Huber, M. et al., VEGAN, a package of R functions for community ecology Catalysis at a dinuclear [CuSMo(O)OH] cluster in a CO dehydrogenase resolved at 1.1-Å resolution, J. Veg. Sci. Proc. Natl. Acad. Sci. U.S.A, vol.14, issue.99, pp.927-930, 2002.

K. E. Dunfield and G. M. King, Analysis of the distribution and diversity in recent Hawaiian volcanic deposits of a putative carbon monoxide dehydrogenase large subunit gene, Environmental Microbiology, vol.15, issue.9, pp.1405-1412, 2005.
DOI : 10.1016/S1369-5274(02)00324-7

R. C. Edgar and M. Elashkar, MUSCLE: multiple sequence alignment with high accuracy and high throughput Simplified textural classification triangles, Nucleic Acids Res. Soil Sci. Soc. Am. J, vol.32, issue.26, pp.1792-1797, 1962.

R. Fudou, Y. Jojima, T. Iizuka, Y. , and S. , Haliangium ochraceum gen. nov., sp. nov. and Haliangium tepidum sp. nov.: Novel moderately halophilic myxobacteria isolated from coastal saline environments., The Journal of General and Applied Microbiology, vol.48, issue.2, pp.109-115, 2002.
DOI : 10.2323/jgam.48.109

K. R. Hardy and G. M. King, Enrichment of High-Affinity CO Oxidizers in Maine Forest Soil, Applied and Environmental Microbiology, vol.67, issue.8, pp.3671-3676, 2001.
DOI : 10.1128/AEM.67.8.3671-3676.2001

R. Hille, Molybdenum-containing hydroxylases, Archives of Biochemistry and Biophysics, vol.433, issue.1, pp.107-116, 2005.
DOI : 10.1016/j.abb.2004.08.012

T. Holloway and I. Levy, Global distribution of carbon monoxide, Journal of Geophysical Research: Atmospheres, vol.104, issue.D10, pp.12123-12147, 2000.
DOI : 10.1029/1999JD901173

R. E. Inman, R. B. Ingersoll, and E. A. Levy, Soil: A Natural Sink for Carbon Monoxide, Science, vol.172, issue.3989, 1971.
DOI : 10.1126/science.172.3989.1229

Y. M. Kim and S. W. Park, Microbiology and genetics of CO utilization in mycobacteria, Antonie van Leeuwenhoek, vol.3, issue.4, pp.685-700, 2012.
DOI : 10.1007/s10482-012-9698-y

L. Kimble, L. Mandelco, C. Woese, M. Madigan, C. E. King et al., Heliobacterium modesticaldum , sp. nov., a thermophilic heliobacterium of hot springs and volcanic soils Description of Thermogemmatispora carboxidivorans sp. nov., a novel carbon monoxide-oxidizing member of the Ktedonobacteria isolated from a geothermally-heated biofilm, and analysis of carbon monoxide oxidation by members of the Ktedonobacteria, Arch. Microbiol. Int. J. Syst. Evol. Microbiol, vol.163, issue.64, pp.259-267, 1995.

G. M. King, Attributes of atmospheric carbon monoxide oxidation by Maine forest soils, Appl. Environ. Microbiol, vol.65, pp.5257-5264, 1999.

G. M. King, Characteristics and significance of atmospheric carbon monoxide consumption by soils, Chemosphere - Global Change Science, vol.1, issue.1-3, pp.53-63, 1999.
DOI : 10.1016/S1465-9972(99)00021-5

G. M. King and G. M. King, Land use impacts on atmospheric carbon monoxide consumption by soils, Global Biogeochemical Cycles, vol.102, issue.4, pp.1161-1172, 2000.
DOI : 10.1029/2000GB001272

G. M. King, Uptake of Carbon Monoxide and Hydrogen at Environmentally Relevant Concentrations by Mycobacteria??, Applied and Environmental Microbiology, vol.69, issue.12, pp.7266-7272, 2003.
DOI : 10.1128/AEM.69.12.7266-7272.2003

G. M. King, H. G. Crosby, and M. Hungria, Impacts of plant roots on soil CO cycling and soil-atmosphere CO exchange, Global Change Biology, vol.2, issue.11, pp.1085-1093, 2002.
DOI : 10.1073/pnas.94.26.14848

G. M. King, W. , C. F. King, G. M. Weber, C. F. Nanba et al., Distribution, diversity and ecology of aerobic CO-oxidizing bacteria, Nature Reviews Microbiology, vol.14, issue.2, pp.107-118, 2005.
DOI : 10.1093/nar/25.24.4876

P. Legendre, E. C. Gallagher, and R. Knight, Ecologically meaningful transformations for ordination of species data UniFrac: a new phylogenetic method for comparing microbial communities, Oecologia Appl. Environ. Microbiol, vol.129, issue.71, pp.271-280, 2001.

C. Luo, L. M. Rodriguez-r, E. R. Johnston, L. Wu, L. Cheng et al., Soil Microbial Community Responses to a Decade of Warming as Revealed by Comparative Metagenomics, Applied and Environmental Microbiology, vol.80, issue.5, pp.1777-1786, 1128.
DOI : 10.1128/AEM.03712-13

G. Mörsdorf, K. Frunzke, D. Gadkari, M. , and O. , Microbial growth on carbon monoxide, Biodegradation, vol.3, pp.61-82, 1992.

J. M. Moxley and K. A. Smith, Factors affecting utilisation of atmospheric CO by soils, Soil Biology and Biochemistry, vol.30, issue.1, pp.65-79, 1998.
DOI : 10.1016/S0038-0717(97)00095-3

L. Nazaries, Y. Pan, L. Bodrossy, E. M. Baggs, P. Millard et al., Evidence of Microbial Regulation of Biogeochemical Cycles from a Study on Methane Flux and Land Use Change, Applied and Environmental Microbiology, vol.79, issue.13, pp.4031-4040, 1128.
DOI : 10.1128/AEM.00095-13

P. C. Novelli, K. A. Masarie, L. , and P. M. , Distributions and recent changes of carbon monoxide in the lower troposphere, Journal of Geophysical Research: Atmospheres, vol.94, issue.2, pp.19015-19033, 1998.
DOI : 10.1029/98JD01366

P. C. Novelli, K. A. Masarie, P. M. Lang, B. D. Hall, R. C. Myers et al., Reanalysis of tropospheric CO trends: effects of the 1997?1998 wildfires Genome-derived criteria for assigning environmental narG and nosZ sequences to operational taxonomic units of nitrate reducers, J. Geophys. Res. Atmos. Appl. Environ. Microbiol, vol.108, issue.75, pp.5170-5174, 1128.

E. Pendall, L. Schwendenmann, T. Rahn, J. B. Miller, P. P. Tans et al., Land use and season affect fluxes of CO2, CH4, CO, N2O, H2 and isotopic source signatures in Panama: evidence from nocturnal boundary layer profiles, Global Change Biology, vol.34, issue.10, pp.2721-2736, 2010.
DOI : 10.1111/j.1365-2486.2010.02199.x

J. I. Prosser, Replicate or lie, R.F.F.S. Computing, pp.1806-1810, 2008.
DOI : 10.1111/j.1462-2920.2010.02201.x

H. Reichenbach, The ecology of the myxobacteria, Environmental Microbiology, vol.31, issue.1, pp.15-21, 1999.
DOI : 10.1016/0378-1097(81)90148-8

E. Sanhueza, Y. Dong, J. Lobert, C. , and P. , Carbon monoxide uptake by temperate forest soils: the effects of leaves and humus layers, Tellus B, vol.50, 1998.

B. Santiago, U. Schübel, C. Egelseer, M. , and O. , Sequence analysis, characterization and CO-specific transcription of the cox gene cluster on the megaplasmid pHCG3 of Oligotropha carboxidovorans, Gene, vol.236, issue.1, pp.115-124, 1999.
DOI : 10.1016/S0378-1119(99)00245-0

P. D. Schloss, S. L. Westcott, T. Ryabin, J. R. Hall, M. Hartmann et al., Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities, Applied and Environmental Microbiology, vol.75, issue.23, pp.7537-7541, 1128.
DOI : 10.1128/AEM.01541-09

B. K. Singh, K. Tate, N. Thomas, D. Ross, and J. Singh, Differential effect of afforestation on nitrogen-fixing and denitrifying communities and potential implications for nitrogen cycling, Soil Biology and Biochemistry, vol.43, issue.7, pp.1426-1433, 2011.
DOI : 10.1016/j.soilbio.2011.03.007

T. Song, S. W. Park, S. Park, J. H. Kim, J. Y. Yu et al., Cloning and expression analysis of the duplicated genes for carbon monoxide dehydrogenase of Mycobacterium sp. strain JC1 DSM 3803, Microbiology, vol.156, issue.4, pp.999-1008, 2010.
DOI : 10.1099/mic.0.034769-0

K. Tamura, J. Dudley, M. Nei, and S. Kumar, MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0, Molecular Biology and Evolution, vol.24, issue.8, pp.1596-1599, 2007.
DOI : 10.1093/molbev/msm092

J. D. Tolli, S. M. Sievert, T. , and C. D. , Unexpected Diversity of Bacteria Capable of Carbon Monoxide Oxidation in a Coastal Marine Environment, and Contribution of the Roseobacter-Associated Clade to Total CO Oxidation, Applied and Environmental Microbiology, vol.72, issue.3, pp.1966-1973, 1966.
DOI : 10.1128/AEM.72.3.1966-1973.2006

S. Vasileiadis, E. Puglisi, M. Arena, F. Cappa, J. A. Van-veen et al., Soil microbial diversity patterns of a lowland spring environment, FEMS Microbiology Ecology, vol.86, issue.2, pp.172-184, 2013.
DOI : 10.1111/1574-6941.12150

C. F. Weber and G. M. King, Physiological, Ecological, and Phylogenetic Characterization of Stappia, a Marine CO-Oxidizing Bacterial Genus, Applied and Environmental Microbiology, vol.73, issue.4, pp.1266-1276, 2007.
DOI : 10.1128/AEM.01724-06

C. F. Weber and G. M. King, Distribution and diversity of carbon monoxide-oxidizing bacteria and bulk bacterial communities across a succession gradient on a Hawaiian volcanic deposit, Environmental Microbiology, vol.73, issue.7, pp.1855-1867, 2010.
DOI : 10.1111/j.1462-2920.2010.02190.x

C. F. Weber and G. M. King, Quantification of Burkholderia coxL Genes in Hawaiian Volcanic Deposits, Applied and Environmental Microbiology, vol.76, issue.7, pp.2212-2217, 2010.
DOI : 10.1128/AEM.01861-09

C. F. Weber and G. M. King, The phylogenetic distribution and ecological role of carbon monoxide oxidation in the genus Burkholderia, FEMS Microbiology Ecology, vol.79, issue.1, 2012.
DOI : 10.1111/j.1574-6941.2011.01206.x

X. Zhou, S. Li, W. Li, D. Jiang, K. Han et al., Myxobacterial community is a predominant and highly diverse bacterial group in soil niches, Environmental Microbiology Reports, vol.68, issue.1, pp.45-56, 2014.
DOI : 10.1111/1758-2229.12107