J. Dale, R. Nor, S. Ramayah, T. Tang, and Z. Zainuddin, Molecular epidemiology of tuberculosis in Malaysia, Journal of Clinical Microbiology, vol.37, pp.1265-1268, 1999.

I. Parwati, R. Van-crevel, and D. Van-soolingen, Possible underlying mechanisms for successful emergence of the Mycobacterium tuberculosis Beijing genotype strains, The Lancet Infectious Diseases, vol.10, issue.2, pp.103-111, 2010.
DOI : 10.1016/S1473-3099(09)70330-5

A. Albanna, M. Reed, K. Kotar, A. Fallow, and F. Mcintosh, Reduced Transmissibility of East African Indian Strains of Mycobacterium tuberculosis, PLoS ONE, vol.103, issue.9, p.25075, 2011.
DOI : 10.1371/journal.pone.0025075.s004

H. Dou, F. Tseng, C. Lin, J. Chang, and J. Sun, Molecular epidemiology and evolutionary genetics of Mycobacterium tuberculosisin Taipei, BMC Infectious Diseases, vol.101, issue.14, p.170, 2008.
DOI : 10.1073/pnas.0305634101

T. Jagielski, J. Van-ingen, N. Rastogi, J. Dziadek, and P. Mazur, Current Methods in the Molecular Typing of Mycobacterium tuberculosis and Other Mycobacteria, BioMed Research International, vol.2014, p.21, 2014.
URL : https://hal.archives-ouvertes.fr/pasteur-01011068

D. García-de-viedma, I. Mokrousov, and N. Rastogi, Innovations in the molecular epidemiology of tuberculosis, Enfermedades Infecciosas y Microbiolog??a Cl??nica, vol.29, pp.8-13, 2011.
DOI : 10.1016/S0213-005X(11)70012-X

J. Kamerbeek, L. Schouls, A. Kolk, M. Van-agterveld, and D. Van-soolingen, Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology, Journal of Clinical Microbiology, vol.35, pp.907-914, 1997.

C. Demay, B. Liens, T. Burguiè-re, V. Hill, and D. Couvin, SITVITWEB ??? A publicly available international multimarker database for studying Mycobacterium tuberculosis genetic diversity and molecular epidemiology, Infection, Genetics and Evolution, vol.12, issue.4, pp.755-766, 2012.
DOI : 10.1016/j.meegid.2012.02.004

URL : https://hal.archives-ouvertes.fr/pasteur-00691750

H. David, V. Lé-vy-fré-bault, and M. Thorel, Mé thodes de laboratoire pour mycobacté riologie clinique, 1989.

L. Fallico, D. Couvin, M. Peracchi, M. Pascarella, and E. Franchin, Four year longitudinal study of Mycobacterium tuberculosis complex isolates in a region of North-Eastern Italy, Infection, Genetics and Evolution, vol.26, pp.58-64, 2014.
DOI : 10.1016/j.meegid.2014.05.004

URL : https://hal.archives-ouvertes.fr/pasteur-01011080

I. Mokrousov, The quiet and controversial: Ural family of Mycobacterium tuberculosis, Infection, Genetics and Evolution, vol.12, issue.4, pp.619-629, 2012.
DOI : 10.1016/j.meegid.2011.09.026

C. Tang, J. Reyes, F. Luciani, A. Francis, and M. Tanaka, spolTools: online utilities for analyzing spoligotypes of the Mycobacterium tuberculosis complex, Bioinformatics, vol.24, issue.20, pp.2414-2415, 2008.
DOI : 10.1093/bioinformatics/btn434

J. Reyes, A. Francis, and M. Tanaka, Models of deletion for visualizing bacterial variation: an application to tuberculosis spoligotypes, BMC Bioinformatics, vol.9, issue.1, p.496, 2008.
DOI : 10.1186/1471-2105-9-496