_. Note, * SIT and lineage designations are shown following SITVIT2 proprietary database of Institut Pasteur de Guadeloupe Note that countrywide distribution is only shown for SITs with P3% of a given SIT as compared to their total number in the SITVIT2 database. [1] World Health Organization (WHO) Available from http, Global Tuberculosis Report

L. Lawson, J. Zhang, and M. K. Gomgnimbou, A Molecular Epidemiological and Genetic Diversity Study of Tuberculosis in Ibadan, Nnewi and Abuja, Nigeria, PLoS ONE, vol.6, issue.6, p.38409, 2012.
DOI : 10.1371/journal.pone.0038409.s001
URL : https://hal.archives-ouvertes.fr/hal-00763747

S. Cadmus, S. Palmer, and M. Okker, Molecular Analysis of Human and Bovine Tubercle Bacilli from a Local Setting in Nigeria, Journal of Clinical Microbiology, vol.44, issue.1, pp.44-73, 2006.
DOI : 10.1128/JCM.44.1.29-34.2006

S. I. Cadmus, A. O. Jenkins, and J. Godfroid, Mycobacterium tuberculosis and Mycobacterium africanum in stools from children attending an immunization clinic in Ibadan, Nigeria, International Journal of Infectious Diseases, vol.13, issue.6, pp.13-740, 2009.
DOI : 10.1016/j.ijid.2008.11.016

A. O. Kehinde, F. A. Obaseki, and O. C. Ishola, Multidrug resistance to Mycobacterium tuberculosis in a tertiary hospital, J. Natl Med. Assoc, pp.99-1185, 2007.

A. Ani, T. Bruvik, and Y. Okoh, Genetic diversity of Mycobacterium tuberculosis Complex in Jos, Nigeria, BMC Infectious Diseases, vol.10, issue.1, pp.189-193, 2010.
DOI : 10.1016/S1473-3099(09)70330-5

R. Frothingham and W. Meeker-o-'connell, Genetic diversity in the Mycobacterium tuberculosis complex based on variable numbers of tandem DNA repeats, Microbiology, vol.144, issue.5, pp.1189-1196, 1998.
DOI : 10.1099/00221287-144-5-1189

O. V. Surikova, D. S. Voitech, and G. Kuzmicheoi, Efficient Differentiation of Mycobacterium tuberculosis Strains of the W-Beijing Family from Russia using Highly Polymorphic VNTR Loci, European Journal of Epidemiology, vol.30, issue.11, pp.963-974, 2005.
DOI : 10.1007/s10654-005-3636-5

S. Garbaccio, A. Macias, and E. Shimizu, in cattle, Virulence, vol.148, issue.2, pp.297-302, 2014.
DOI : 10.1016/j.jcpa.2005.05.001

D. L. Williams, T. P. Gills, and W. G. Dupree, Ethanol fixation of sputum sediments for DNA-based detection of Mycobacterium tuberculosis, J. Clin. Microbiol, vol.33, pp.1558-1561, 1995.

J. Kamerbeek, L. Schouls, and A. Kolk, Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology, J. Clin. Microbiol, vol.35, pp.907-914, 1997.

D. Goguet, Y. O. Salmoniere, and H. M. Li, Evaluation of spoligotyping in a study of the transmission of Mycobacterium tuberculosis, J. Clin. Microbiol, vol.35, pp.2210-2214, 1997.

C. Demay, B. Liens, and T. Burguiè, SITVITWEB ??? A publicly available international multimarker database for studying Mycobacterium tuberculosis genetic diversity and molecular epidemiology, Infection, Genetics and Evolution, vol.12, issue.4, pp.755-766, 2012.
DOI : 10.1016/j.meegid.2012.02.004
URL : https://hal.archives-ouvertes.fr/pasteur-00691750

D. Yeboah-manu, A. Asante-poku, and T. Bodmer, Genotypic Diversity and Drug Susceptibility Patterns among M. tuberculosis Complex Isolates from South-Western Ghana, PLoS ONE, vol.6, issue.9, p.21906, 2011.
DOI : 10.1371/journal.pone.0021906.t004

S. Homolka, E. Post, and B. Oberhauser, High genetic diversity among Mycobacterium tuberculosis complex strains from Sierra Leone, BMC Microbiology, vol.8, issue.1, pp.103-110, 2008.
DOI : 10.1186/1471-2180-8-103

S. Godreuil, G. Torrea, and D. Terru, First Molecular Epidemiology Study of Mycobacterium tuberculosis in Burkina Faso, Journal of Clinical Microbiology, vol.45, issue.3, pp.921-927, 2007.
DOI : 10.1128/JCM.01918-06

B. P. Thumamo, A. E. Asuquo, and L. N. Abia-bassey, Molecular epidemiology and genetic diversity of Mycobacterium tuberculosis complex in the Cross River State, Nigeria, Infection, Genetics and Evolution, vol.12, issue.4, pp.12-671, 2012.
DOI : 10.1016/j.meegid.2011.08.011
URL : https://hal.archives-ouvertes.fr/pasteur-00691757

D. Bonard, P. Msellati, and L. Rigouts, What is the meaning of repeated isolation of Mycobacterium africanum?, Int J. Tuberc. Lung Dis, vol.4, pp.1176-1180, 2000.

]. D. Alland, G. E. Kalkut, and A. R. Moss, Transmission of Tuberculosis in New York City -- An Analysis by DNA Fingerprinting and Conventional Epidemiologic Methods, New England Journal of Medicine, vol.330, issue.24, pp.330-1710, 1994.
DOI : 10.1056/NEJM199406163302403

M. W. Borgdorff, N. Nagelkerke, and D. Van-soolingen, Analysis of Tuberculosis Transmission between Nationalities in the Netherlands in the Period 1993-1995 Using DNA Fingerprinting, American Journal of Epidemiology, vol.147, issue.2, pp.147-187, 1998.
DOI : 10.1093/oxfordjournals.aje.a009433

J. R. Glynn, A. C. Crampin, and H. Traore, Determinants of Cluster Size in Large, Population-Based Molecular Epidemiology Study of Tuberculosis, Northern Malawi, Emerging Infectious Diseases, vol.14, issue.7, pp.13-1060, 1998.
DOI : 10.3201/eid1407.060468

L. C. Lazzarini, J. Rosenfeld, and R. C. Huard, Mycobacterium tuberculosis spoligotypes that may derive from mixed strain infections are revealed by a novel computational approach, Infection, Genetics and Evolution, vol.12, issue.4, pp.12-798, 2012.
DOI : 10.1016/j.meegid.2011.08.028
URL : https://hal.archives-ouvertes.fr/pasteur-00691753