Multivariate dispersion as a measure of beta diversity, Ecology Letters, vol.9, issue.6, pp.683-693, 2006. ,
DOI : 10.2307/1218190
Using null model analysis of species co-occurrences to deconstruct biodiversity patterns and select indicator species, Diversity and Distributions, vol.30, issue.6, pp.958-971, 2009. ,
DOI : 10.1111/j.1472-4642.2009.00613.x
Linking Biodiversity and Ecosystem Services: Current Uncertainties and the Necessary Next Steps, BioScience, vol.64, issue.1, pp.49-57, 2014. ,
DOI : 10.1093/biosci/bit003
Biomarkers, Bioindicators, and Ecological Risk Assessment???A Brief Review and Evaluation, Environmental Bioindicators, vol.53, issue.1, pp.60-73, 2006. ,
DOI : 10.1023/A:1008990828651
Rapid, direct extraction of DNA from soils for PCR analysis using polyvinylpolypyrrolidone spin columns, FEMS Microbiology Letters, vol.138, issue.1, pp.17-22, 1996. ,
DOI : 10.1111/j.1574-6968.1996.tb08128.x
FORWARD SELECTION OF EXPLANATORY VARIABLES, Ecology, vol.8, issue.9, pp.2623-2632, 2008. ,
DOI : 10.2307/1268227
Numerical Ecology with R, 2011. ,
DOI : 10.1007/978-1-4419-7976-6
URL : https://hal.archives-ouvertes.fr/hal-00530195
Early performance of planted hybrid larch: effects of mechanical site preparation and planting depth, New Forests, vol.48, issue.6, pp.319-337, 2015. ,
DOI : 10.1007/s11056-014-9463-3
QIIME allows analysis of high-throughput community sequencing data, Nature Methods, vol.8, issue.5, pp.335-336, 2010. ,
DOI : 10.1038/nmeth.f.303
Testing of null hypotheses in exploratory community analyses: similarity profiles and biota-environment linkage, Journal of Experimental Marine Biology and Ecology, vol.366, issue.1-2, pp.56-69, 2008. ,
DOI : 10.1016/j.jembe.2008.07.009
Isolation of Streptomyces sp. PCB7, the first microorganism demonstrating high-affinity uptake of tropospheric H2, The ISME Journal, vol.31, issue.10, pp.1066-1076, 2008. ,
DOI : 10.1038/ismej.2008.59
Tropospheric H2 budget and the response of its soil uptake under the changing environment, Science of The Total Environment, vol.407, issue.6, pp.1809-1823, 2009. ,
DOI : 10.1016/j.scitotenv.2008.10.064
URL : https://hal.archives-ouvertes.fr/pasteur-00819952
Genome Data Mining and Soil Survey for the Novel Group 5 [NiFe]-Hydrogenase To Explore the Diversity and Ecological Importance of Presumptive High-Affinity H2-Oxidizing Bacteria, Applied and Environmental Microbiology, vol.77, issue.17, pp.6027-6035, 2011. ,
DOI : 10.1128/AEM.00673-11
Stoichiometry constrains microbial response to root exudation- insights from a model and a field experiment in a temperate forest, Biogeosciences, vol.10, issue.2, pp.821-838, 2013. ,
DOI : 10.5194/bg-10-821-2013-supplement
Species assemblages and indicator species: the need for a flexible asymetrical approach, Ecol Monogr, vol.67, pp.345-366, 1997. ,
UPARSE: highly accurate OTU sequences from microbial amplicon reads, Nature Methods, vol.486, issue.10, pp.996-998, 2013. ,
DOI : 10.1093/nar/gkr1184
UCHIME improves sensitivity and speed of chimera detection, Bioinformatics, vol.27, issue.16, pp.2194-2200, 2011. ,
DOI : 10.1093/bioinformatics/btr381
: a critical review, Tellus B: Chemical and Physical Meteorology, vol.104, issue.14347, pp.500-535, 2009. ,
DOI : 10.1029/2002GB001952
Simplified Textural Classification Triangles1, Soil Science Society of America Journal, vol.26, issue.6, pp.612-613, 1962. ,
DOI : 10.2136/sssaj1962.03615995002600060028x
Assessment of Soil Microbial Community Structure by Use of Taxon-Specific Quantitative PCR Assays, Applied and Environmental Microbiology, vol.71, issue.7, pp.4117-4120, 2005. ,
DOI : 10.1128/AEM.71.7.4117-4120.2005
MULTIPLE FUNCTIONS INCREASE THE IMPORTANCE OF BIODIVERSITY FOR OVERALL ECOSYSTEM FUNCTIONING, Ecology, vol.89, issue.5, pp.1223-1231, 2008. ,
DOI : 10.1073/pnas.96.4.1463
Hydrogen consumption and carbon monoxide production in soils with different properties, Biol Fertil Soils, vol.32, pp.129-134, 2000. ,
Succession and resilience in boreal mixedwood plant communities 15???16 years after silvicultural site preparation, Forest Ecology and Management, vol.199, issue.2-3, pp.349-370, 2004. ,
DOI : 10.1016/j.foreco.2004.05.052
Biodiversity and ecosystem multifunctionality, Nature, vol.44, issue.7150, pp.188-190, 2007. ,
DOI : 10.1038/nature05947
How strongly can forest management influence soil carbon sequestration? Geoderma, pp.253-268, 2007. ,
Soil properties and growth of swamp white oak and pin oak on bedded soils in the lower Missouri River floodplain, Forest Ecology and Management, vol.204, issue.2-3, pp.315-327, 2005. ,
DOI : 10.1016/j.foreco.2004.09.014
Soil carbon content and relative abundance of high affinity H2-oxidizing bacteria predict atmospheric H2 soil uptake activity better than soil microbial community composition, Soil Biology and Biochemistry, vol.85, pp.1-9, 2015. ,
DOI : 10.1016/j.soilbio.2015.02.030
URL : https://hal.archives-ouvertes.fr/pasteur-01352172
Description of Thermogemmatispora carboxidivorans sp. nov., a carbon-monoxide-oxidizing member of the class Ktedonobacteria isolated from a geothermally heated biofilm, and analysis of carbon monoxide oxidation by members of the class Ktedonobacteria, INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, vol.64, issue.Pt 4, pp.1244-1251, 2014. ,
DOI : 10.1099/ijs.0.059675-0
Distribution, diversity and ecology of aerobic CO-oxidizing bacteria, Nature Reviews Microbiology, vol.14, issue.2, pp.107-118, 2007. ,
DOI : 10.1093/nar/25.24.4876
Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale, Applied and Environmental Microbiology, vol.75, issue.15, pp.5111-5120, 2009. ,
DOI : 10.1128/AEM.00335-09
Ecologically meaningful transformations for ordination of species data, Oecologia, vol.129, issue.2, pp.271-280, 2001. ,
DOI : 10.1007/s004420100716
Mechanical site preparation for forest restoration, pp.825-848, 2012. ,
FLASH: fast length adjustment of short reads to improve genome assemblies, Bioinformatics, vol.27, issue.21, pp.2957-2963, 2011. ,
DOI : 10.1093/bioinformatics/btr507
Issues and solutions for intensive plantation silviculture in a context of ecosystem management. For Chronicle, pp.748-762, 2014. ,
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea, The ISME Journal, vol.180, issue.3, pp.610-618, 2012. ,
DOI : 10.1038/nature08656
Consumption of atmospheric hydrogen during the life cycle of soil-dwelling actinobacteria, Environmental Microbiology Reports, vol.52, issue.3, pp.226-238, 2013. ,
DOI : 10.1111/1758-2229.12116
Vegan: community ecology package. R package version 2, 2012. ,
The role of plantations in managing the world's forests in the Anthropocene, Frontiers in Ecology and the Environment, vol.105, issue.1, pp.27-34, 2009. ,
DOI : 10.1130/GSAT01802A.1
Small mammals as bioindicators of sustainable boreal forest management, Forest Ecology and Management, vol.208, issue.1-3, pp.153-175, 2005. ,
DOI : 10.1016/j.foreco.2004.11.024
The use of ground beetles (Coleoptera: Carabidae) and spiders (Araneae) as bioindicators of sustainable forest management: A review, Ecological Indicators, vol.6, issue.4, pp.780-793, 2006. ,
DOI : 10.1016/j.ecolind.2005.03.005
Effets du scarifiage sur les propri??t??s du sol, la croissance des semis et la comp??tition : revue des connaissances actuelles et perspectives de recherches au Qu??bec, Annales des Sciences Foresti??res, vol.49, issue.3, pp.277-296, 1992. ,
DOI : 10.1051/forest:19920306
Land-use influences the distribution and activity of high affinity CO-oxidizing bacteria associated to type I-coxL genotype in soil, Frontiers in Microbiology, vol.12, pp.1-15, 2014. ,
DOI : 10.1111/j.1462-2920.2010.02201.x
URL : https://hal.archives-ouvertes.fr/pasteur-01136134
R: A language and environment for statistical computing, 2008. ,
The R Stats Package version 3.1.3. URL https://stat.ethz, 2014. ,
Root production of hybrid poplars and nitrogen mineralization improve following mounding of boreal Podzols, Can J For Res, vol.43, pp.1092-1103, 2013. ,
The role of microbial indicators of soil quality in ecological forest management, The Forestry Chronicle, vol.75, issue.1, pp.81-86, 1999. ,
DOI : 10.5558/tfc75081-1
Mounding site preparation: A review of European and North American experience, New Forests, vol.71, issue.7, pp.151-192, 1993. ,
DOI : 10.1007/BF00034198
Stability of soil microbial structure and activity depends on microbial diversity, Environmental Microbiology Reports, vol.3, issue.2, pp.173-183, 2014. ,
DOI : 10.1111/1758-2229.12126
URL : https://hal.archives-ouvertes.fr/hal-00974712
heath to productive conifer plantation, Canadian Journal of Forest Research, vol.36, issue.10, pp.2364-2376, 2006. ,
DOI : 10.1139/x06-090
ORIGINAL ARTICLE: Comparison of predictor sets for species richness and the number of rare species of butterflies and birds, Journal of Biogeography, vol.13, issue.1, pp.90-101, 2007. ,
DOI : 10.1111/j.1365-2699.2006.01576.x
Fossil: Palaeoecological and palaeogeographical analysis tools -R Package version 0, 2012. ,
Soil biodiversity and soil community composition determine ecosystem multifunctionality, Proceedings of the National Academy of Sciences, vol.111, issue.14, pp.5266-5270, 2014. ,
DOI : 10.1073/pnas.1320054111
Distribution and diversity of carbon monoxide-oxidizing bacteria and bulk bacterial communities across a succession gradient on a Hawaiian volcanic deposit, Environmental Microbiology, vol.73, issue.7, pp.1855-1867, 2010. ,
DOI : 10.1111/j.1462-2920.2010.02190.x