T. Allander, K. Andreasson, S. Gupta, A. Bjerkner, G. Bogdanovic et al., Identification of a Third Human Polyomavirus, Journal of Virology, vol.81, issue.8, pp.4130-4136, 2007.
DOI : 10.1128/JVI.00028-07

T. Allander, M. T. Tammi, M. Eriksson, A. Bjerkner, A. Tiveljung-lindell et al., From The Cover: Cloning of a human parvovirus by molecular screening of respiratory tract samples, Proc. Natl. Acad. Sci. USA, pp.12891-12896, 2005.
DOI : 10.1073/pnas.0504666102

T. Allander, S. U. Emerson, R. E. Engle, R. H. Purcell, and J. Bukh, A virus discovery method incorporating DNase treatment and its application to the identification of two bovine parvovirus species, Proc. Natl. Acad. Sci. USA, pp.11609-11614, 2001.
DOI : 10.1073/pnas.211424698

K. Ambert-balay, M. Lorrot, F. Bon, H. Giraudon, J. Kaplon et al., Prevalence and Genetic Diversity of Aichi Virus Strains in Stool Samples from Community and Hospitalized Patients, Journal of Clinical Microbiology, vol.46, issue.4, pp.1252-1258, 2008.
DOI : 10.1128/JCM.02140-07

URL : https://hal.archives-ouvertes.fr/hal-00510656

O. Blinkova, A. Kapoor, J. Victoria, M. Jones, N. Wolfe et al., Cardioviruses Are Genetically Diverse and Cause Common Enteric Infections in South Asian Children, Journal of Virology, vol.83, issue.9, pp.4631-4641, 2009.
DOI : 10.1128/JVI.02085-08

T. Briese, J. T. Paweska, L. K. Mcmullan, S. I. Hutchison, C. Street et al., Genetic Detection and Characterization of Lujo Virus, a New Hemorrhagic Fever???Associated Arenavirus from Southern Africa, PLoS Pathogens, vol.5, issue.6, p.1000455, 2009.
DOI : 10.1371/journal.ppat.1000455.s003

C. Y. Chiu, A. L. Greninger, K. Kanada, T. Kwok, K. F. Fischer et al., Identification of cardioviruses related to Theiler's murine encephalomyelitis virus in human infections, Proc. Natl. Acad. Sci. USA, pp.14124-14129, 2008.
DOI : 10.1073/pnas.0805968105

D. L. Cox-foster, S. Conlan, E. C. Holmes, G. Palacios, J. D. Evans et al., A Metagenomic Survey of Microbes in Honey Bee Colony Collapse Disorder, Science, vol.318, issue.5848, pp.283-287, 2007.
DOI : 10.1126/science.1146498

E. L. Delwart, Viral metagenomics, Reviews in Medical Virology, vol.13, issue.2, pp.115-131, 2007.
DOI : 10.1002/rmv.532

H. Feng, M. Shuda, Y. Chang, and P. S. Moore, Clonal Integration of a Polyomavirus in Human Merkel Cell Carcinoma, Science, vol.319, issue.5866, pp.1096-1100, 2008.
DOI : 10.1126/science.1152586

S. R. Finkbeiner, C. D. Kirkwood, and D. Wang, Complete genome sequence of a highly divergent astrovirus isolated from a child with acute diarrhea, Virology Journal, vol.5, issue.1, p.117, 2008.
DOI : 10.1093/nar/gkj149

A. M. Gaynor, M. D. Nissen, D. M. Whiley, I. M. Mackay, S. B. Lambert et al., Identification of a Novel Polyomavirus from Patients with Acute Respiratory Tract Infections, PLoS Pathogens, vol.25, issue.5, p.64, 2007.
DOI : 10.1371/journal.ppat.0030064.st001

M. Goyer, L. S. Aho, J. B. Bour, K. Ambert-balay, and P. Pothier, Seroprevalence distribution of Aichi virus among a French population in 2006???2007, Archives of Virology, vol.39, issue.6, pp.1171-1174, 2006.
DOI : 10.1007/s00705-008-0091-0

URL : https://hal.archives-ouvertes.fr/hal-00465369

A. L. Greninger, C. Runckel, C. Y. Chiu, T. Haggerty, J. Parsonnet et al., The complete genome of klassevirus - a novel picornavirus in pediatric stool, Virology Journal, vol.6, issue.1, p.82, 2009.
DOI : 10.1186/1743-422X-6-82

C. U. Hellen and P. Sarnow, Internal ribosome entry sites in eukaryotic mRNA molecules, Genes & Development, vol.15, issue.13, pp.1593-1612, 2001.
DOI : 10.1101/gad.891101

URL : http://genesdev.cshlp.org/cgi/content/short/15/13/1593

L. R. Holtz, S. R. Finkbeiner, G. Zhao, C. D. Kirkwood, R. Girones et al., Klassevirus 1, a previously undescribed member of the family Picornaviridae, is globally widespread, Virology Journal, vol.6, issue.1, p.86, 2009.
DOI : 10.1186/1743-422X-6-86

W. I. Briese and . Lipkin, Novel borna virus in psittacine birds with proventricular dilatation disease, Emerg. Infect. Dis, vol.14, pp.1883-1886, 2008.

P. J. Hughes and G. Stanway, The 2A proteins of three diverse picornaviruses are related to each other and to the H-rev107 family of proteins involved in the control of cell proliferation, Journal of General Virology, vol.81, issue.1, pp.201-207, 2000.
DOI : 10.1099/0022-1317-81-1-201

M. S. Jones, B. Ii, R. D. Harrach, M. M. Ganac, W. P. Gozum et al., New Adenovirus Species Found in a Patient Presenting with Gastroenteritis, Journal of Virology, vol.81, issue.11, pp.5978-5984, 2007.
DOI : 10.1128/JVI.02650-06

M. S. Jones, A. Kapoor, V. V. Lukashov, P. Simmonds, F. Hecht et al., New DNA Viruses Identified in Patients with Acute Viral Infection Syndrome, Journal of Virology, vol.79, issue.13, pp.8230-8236, 2005.
DOI : 10.1128/JVI.79.13.8230-8236.2005

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1143717

M. S. Jones, V. V. Lukashov, R. D. Ganac, and D. P. Schnurr, Discovery of a Novel Human Picornavirus in a Stool Sample from a Pediatric Patient Presenting with Fever of Unknown Origin, Journal of Clinical Microbiology, vol.45, issue.7, pp.2144-2150, 2007.
DOI : 10.1128/JCM.00174-07

A. Kapoor, E. Slikas, P. Simmonds, T. Chieochansin, A. Naeem et al., A Newly Identified Bocavirus Species in Human Stool, The Journal of Infectious Diseases, vol.199, issue.2, pp.196-200, 2009.
DOI : 10.1086/595831

A. Kapoor, J. Victoria, P. Simmonds, C. Wang, R. W. Shafer et al., A Highly Divergent Picornavirus in a Marine Mammal, Journal of Virology, vol.82, issue.1, pp.311-320, 2008.
DOI : 10.1128/JVI.01240-07

E. Zaidi and . Delwart, A highly prevalent and genetically diversified Picornaviridae genus in South Asian children, Proc. Natl. Acad. Sci. USA, pp.20482-20487, 2008.

J. M. Kean, S. Rao, M. Wang, and R. L. Garcea, Seroepidemiology of Human Polyomaviruses, PLoS Pathogens, vol.114, issue.3, p.1000363, 2009.
DOI : 10.1371/journal.ppat.1000363.s003

P. Khamrin, N. Maneekarn, S. Peerakome, S. Okitsu, M. Mizuguchi et al., Bovine Kobuviruses from Cattle with Diarrhea, Emerging Infectious Diseases, vol.14, issue.6, pp.985-986, 2008.
DOI : 10.3201/eid1406.070784

URL : http://doi.org/10.3201/eid1406.070784

A. L. Kistler, A. Gancz, S. Clubb, P. Skewes-cox, K. Fischer et al., Recovery of divergent avian bornaviruses from cases of proventricular dilatation disease: Identification of a candidate etiologic agent, Virology Journal, vol.5, issue.1, p.88, 2008.
DOI : 10.1186/1743-422X-5-88

D. Lamson, N. Renwick, V. Kapoor, Z. Liu, G. Palacios et al., MassTag Polymerase???Chain???Reaction Detection of Respiratory Pathogens, Including a New Rhinovirus Genotype, That Caused Influenza???Like Illness in New York State during 2004???2005, The Journal of Infectious Diseases, vol.194, issue.10, pp.1398-1402, 2004.
DOI : 10.1086/508551

. Atmar, Aichi virus, norovirus, astrovirus, enterovirus, and rotavirus involved in clinical cases from a French oyster-related gastroenteritis outbreak, J. Clin. Microbiol, vol.46, pp.4011-4017, 2008.
URL : https://hal.archives-ouvertes.fr/hal-00465367

L. Li, J. Victoria, A. Kapoor, A. Naeem, S. Shaukat et al., Genomic Characterization of Novel Human Parechovirus Type, Emerging Infectious Diseases, vol.15, issue.2, pp.288-291, 2009.
DOI : 10.3201/eid1502.080341

W. I. Lipkin, Pathogen Discovery, PLoS Pathogens, vol.250, issue.7, p.1000002, 2008.
DOI : 10.1371/journal.ppat.1000002.g001

URL : http://doi.org/10.1371/journal.ppat.1000002

P. Norja, I. Ubillos, K. Templeton, and P. Simmonds, No evidence for an association between infections with WU and KI polyomaviruses and respiratory disease, Journal of Clinical Virology, vol.40, issue.4, pp.307-311, 2007.
DOI : 10.1016/j.jcv.2007.09.008

G. Palacios, J. Druce, L. Du, T. Tran, C. Birch et al., A New Arenavirus in a Cluster of Fatal Transplant-Associated Diseases, New England Journal of Medicine, vol.358, issue.10, pp.991-998, 2008.
DOI : 10.1056/NEJMoa073785

W. I. Briese and . Lipkin, Panmicrobial oligonucleotide array for diagnosis of infectious diseases, Emerg. Infect. Dis, vol.13, pp.73-81, 2007.

A. Renwick, T. W. Grolla, C. Geisbert, J. Drosten, J. Towner et al., MassTag polymerase chain reaction for differential diagnosis of viral hemorrhagic fever, Emerg. Infect. Dis, vol.12, pp.692-695, 2006.

N. T. Pham, P. Khamrin, T. A. Nguyen, D. S. Kanti, T. G. Phan et al., Isolation and Molecular Characterization of Aichi Viruses from Fecal Specimens Collected in Japan, Bangladesh, Thailand, and Vietnam, Journal of Clinical Microbiology, vol.45, issue.7, pp.2287-2288, 2007.
DOI : 10.1128/JCM.00525-07

G. Reuter, A. Boldizsár, I. Kiss, and P. Pankovics, in Porcine Hosts, Emerging Infectious Diseases, vol.14, issue.12, pp.1968-1970, 2008.
DOI : 10.3201/eid1412.080797

G. Reuter and L. Egyed, Bovine Kobuvirus in Europe, Emerging Infectious Diseases, vol.15, issue.5, pp.822-823, 2009.
DOI : 10.3201/eid1505.081427

URL : http://doi.org/10.3201/eid1505.081427

A. D. Gunther, C. Osterhaus, M. A. Drosten, L. J. Pallansch, W. J. Anderson et al., Characterization of a novel coronavirus associated with severe acute respiratory syndrome, Science, vol.300, pp.1394-1399, 2003.

X. Sastre-garau, M. Peter, M. F. Avril, H. Laude, J. Couturier et al., Merkel cell carcinoma of the skin: pathological and molecular evidence for a causative role of MCV in oncogenesis, The Journal of Pathology, vol.17, issue.1, pp.48-56, 2009.
DOI : 10.1002/path.2532

. Pothier, Acute infantile gastroenteritis associated with human enteric viruses in Tunisia, J. Clin. Microbiol, vol.46, pp.1349-1355, 2008.
URL : https://hal.archives-ouvertes.fr/hal-00465376

T. P. Sloots, D. M. Whiley, S. B. Lambert, and M. D. Nissen, Emerging respiratory agents: New viruses for old diseases?, Journal of Clinical Virology, vol.42, issue.3, pp.233-243, 2008.
DOI : 10.1016/j.jcv.2008.03.002

A. Urisman, R. J. Molinaro, N. Fischer, S. J. Plummer, G. Casey et al., Identification of a novel gammaretrovirus in prostate tumors of patients homozygous for R462Q RNASEL variant A newly discovered human pneumovirus isolated from young children with respiratory tract disease, Nat. Med, vol.7, pp.719-724, 2001.

E. Varga, M. Kiss, K. Szabó, and L. Kemény, Detection of Merkel cell polyomavirus DNA in Merkel cell carcinomas, British Journal of Dermatology, vol.265, issue.4, pp.930-932, 2009.
DOI : 10.1111/j.1365-2133.2009.09221.x

J. G. Victoria, A. Kapoor, L. Li, O. Blinkova, B. Slikas et al., Metagenomic Analyses of Viruses in Stool Samples from Children with Acute Flaccid Paralysis, Journal of Virology, vol.83, issue.9, pp.4642-4651, 2009.
DOI : 10.1128/JVI.02301-08

D. Wang, L. Coscoy, M. Zylberberg, P. C. Avila, H. A. Boushey et al., Microarray-based detection and genotyping of viral pathogens, Proc. Natl. Acad. Sci. USA, pp.15687-15692, 2002.

T. Yamashita, K. Sakae, H. Tsuzuki, Y. Suzuki, N. Ishikawa et al., Complete nucleotide sequence and genetic organization of Aichi virus, a distinct member of the Picornaviridae associated with acute gastroenteritis in humans, J. Virol, vol.72, pp.8408-8412, 1998.

T. Yamashita, K. Sakae, S. Kobayashi, Y. Ishihara, T. Miyake et al., Isolation of Cytopathic Small Round Virus (Aichi Virus) from Pakistani Children and Japanese Travelers from Southeast Asia, Microbiology and Immunology, vol.31, issue.6, pp.433-435, 1995.
DOI : 10.1111/j.1348-0421.1995.tb02225.x

T. Yamashita, K. Sakae, Y. Ishihara, S. Isomura, and E. Utagawa, Prevalence of newly isolated, cytopathic small round virus (Aichi strain) in Japan, J. Clin. Microbiol, vol.31, pp.2938-2943, 1993.

T. Yamashita, M. Ito, H. Tsuzuki, and K. Sakae, Identification of Aichi Virus Infection by Measurement of Immunoglobulin Responses in an Enzyme-Linked Immunosorbent Assay, Journal of Clinical Microbiology, vol.39, issue.11, pp.4178-4180, 2001.
DOI : 10.1128/JCM.39.11.4178-4180.2001

. Miyazaki, Application of a reverse transcription-PCR for identification and differentiation of Aichi virus, a new member of the Picornavirus family associated with gastroenteritis in humans, J. Clin. Microbiol, vol.38, pp.2955-2961, 2000.

M. Zuker, Mfold web server for nucleic acid folding and hybridization prediction, Nucleic Acids Research, vol.31, issue.13, pp.3406-3415, 2003.
DOI : 10.1093/nar/gkg595

URL : http://doi.org/10.1093/nar/gkg595