R. Daubney, J. Hudson, and P. Garnham, Enzootic hepatitis or rift valley fever. An undescribed virus disease of sheep cattle and man from east africa, The Journal of Pathology and Bacteriology, vol.xcix, issue.4, pp.545-579, 1931.
DOI : 10.1002/path.1700340418

G. Gerdes, Rift Valley Fever, Revue Scientifique et Technique de l'OIE, vol.23, issue.2, pp.613-623, 2004.
DOI : 10.20506/rst.23.2.1500

K. Smithburn, Rift Valley fever; the neurotropic adaptation of the virus and the experimental use of this modified virus as a vaccine, Br J Exp Pathol, vol.30, pp.1-16, 1949.

M. Al-hazmi, E. Ayoola, M. Abdurahman, S. Banzal, J. Ashraf et al., Epidemic Rift Valley Fever in Saudi Arabia: A Clinical Study of Severe Illness in Humans, Clinical Infectious Diseases, vol.36, issue.3, pp.245-252, 2003.
DOI : 10.1086/345671

A. Labeaud, S. Muiruri, L. Sutherland, S. Dahir, G. Gildengorin et al., Postepidemic Analysis of Rift Valley Fever Virus Transmission in Northeastern Kenya: A Village Cohort Study, PLoS Neglected Tropical Diseases, vol.58, issue.8, p.1265, 2011.
DOI : 10.1371/journal.pntd.0001265.s003

T. Madani, Y. Mazrou, M. Jeffri, A. Mishkhas, A. Rabeah et al., Rift Valley Fever Epidemic in Saudi Arabia: Epidemiological, Clinical, and Laboratory Characteristics, Clinical Infectious Diseases, vol.37, issue.8, pp.1084-1092, 2003.
DOI : 10.1086/378747

M. Pepin, M. Bouloy, B. Bird, A. Kemp, and J. Paweska, ): an update on pathogenesis, molecular epidemiology, vectors, diagnostics and prevention, Veterinary Research, vol.41, issue.6, p.61, 2010.
DOI : 10.1051/vetres/2010033

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2896810

F. Kreher, C. Tamietti, C. Gommet, L. Guillemot, M. Ermonval et al., The Rift Valley fever accessory proteins NSm and P78/NSm-GN are distinct determinants of virus propagation in vertebrate and invertebrate hosts, Emerging Microbes & Infections, vol.64, issue.10, p.71, 2014.
DOI : 10.1371/journal.pntd.0001156

URL : https://hal.archives-ouvertes.fr/pasteur-01325890

M. Bouloy and F. Weber, Molecular Biology of Rift Valley Fever Virus, The Open Virology Journal, vol.4, issue.1, pp.8-14, 2010.
DOI : 10.2174/1874357901004010008

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2878978

T. Ikegami, Molecular biology and genetic diversity of Rift Valley fever virus, Antiviral Research, vol.95, issue.3, pp.293-310, 2012.
DOI : 10.1016/j.antiviral.2012.06.001

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3586937

R. Van-rij, M. Saleh, B. Berry, C. Foo, A. Houk et al., The RNA silencing endonuclease Argonaute 2 mediates specific antiviral immunity in Drosophila melanogaster, Genes & Development, vol.20, issue.21, pp.2985-2995, 2006.
DOI : 10.1101/gad.1482006

C. Campbell, W. Black, A. Hess, and B. Foy, Comparative genomics of small RNA regulatory pathway components in vector mosquitoes, BMC Genomics, vol.9, issue.1, p.425, 2008.
DOI : 10.1186/1471-2164-9-425

C. Blair and K. Olson, The Role of RNA Interference (RNAi) in Arbovirus-Vector Interactions, Viruses, vol.156, issue.2, pp.820-843, 2015.
DOI : 10.1098/rspb.2012.2437

G. Attarzadeh-yazdi, R. Fragkoudis, C. Y. Siu, R. Ulper, L. Barry et al., Cell-to-Cell Spread of the RNA Interference Response Suppresses Semliki Forest Virus (SFV) Infection of Mosquito Cell Cultures and Cannot Be Antagonized by SFV, Journal of Virology, vol.83, issue.11, pp.5735-5748, 2009.
DOI : 10.1128/JVI.02440-08

K. Keene, B. Foy, I. Sanchez-vargas, B. Beaty, C. Blair et al., RNA interference acts as a natural antiviral response to O'nyong-nyong virus (Alphavirus; Togaviridae) infection of Anopheles gambiae, Proceedings of the National Academy of Sciences, vol.427, issue.6975, pp.17240-17245, 2004.
DOI : 10.1038/nature02302

P. Léger, E. Lara, B. Jagla, O. Sismeiro, Z. Mansuroglu et al., Dicer-2- and Piwi-Mediated RNA Interference in Rift Valley Fever Virus-Infected Mosquito Cells, Journal of Virology, vol.87, issue.3, pp.1631-164802795, 2013.
DOI : 10.1128/JVI.02795-12

I. Dietrich, X. Shi, M. Mcfarlane, M. Watson, A. Blomström et al., The Antiviral RNAi Response in Vector and Non-vector Cells against Orthobunyaviruses, PLOS Neglected Tropical Diseases, vol.8, issue.7, 2017.
DOI : 10.1371/journal.pntd.0005272.s006

E. Schnettler, H. Hemmes, R. Huismann, R. Goldbach, M. Prins et al., Diverging Affinity of Tospovirus RNA Silencing Suppressor Proteins, NSs, for Various RNA Duplex Molecules, Journal of Virology, vol.84, issue.21, pp.11542-11554, 2010.
DOI : 10.1128/JVI.00595-10

M. Mcfarlane, C. Arias-goeta, E. Martin, O. Hara, Z. Lulla et al., Characterization of Aedes aegypti Innate-Immune Pathways that Limit Chikungunya Virus Replication, PLoS Neglected Tropical Diseases, vol.89, issue.7, p.2994, 2014.
DOI : 10.1371/journal.pntd.0002994.t001

URL : https://hal.archives-ouvertes.fr/hal-01343066

I. Sánchez-vargas, J. Scott, B. Poole-smith, A. Franz, V. Barbosa-solomieu et al., Dengue Virus Type 2 Infections of Aedes aegypti Are Modulated by the Mosquito's RNA Interference Pathway, PLoS Pathogens, vol.35, issue.2, p.1000299, 2009.
DOI : 10.1371/journal.ppat.1000299.t001

E. Schnettler, C. Donald, S. Human, M. Watson, R. Siu et al., Knockdown of piRNA pathway proteins results in enhanced Semliki Forest virus production in mosquito cells, Journal of General Virology, vol.94, issue.Pt_7, pp.1680-1689, 2013.
DOI : 10.1099/vir.0.053850-0

J. Waldock, K. Olson, and G. Christophides, Anopheles gambiae Antiviral Immune Response to Systemic O'nyong-nyong Infection, PLoS Neglected Tropical Diseases, vol.58, issue.3, p.1565, 2012.
DOI : 10.1371/journal.pntd.0001565.s004

URL : http://doi.org/10.1371/journal.pntd.0001565

E. Bucher, T. Sijen, D. Haan, P. Goldbach, R. Prins et al., Negative-Strand Tospoviruses and Tenuiviruses Carry a Gene for a Suppressor of Gene Silencing at Analogous Genomic Positions, Journal of Virology, vol.77, issue.2, pp.1329-1336, 2003.
DOI : 10.1128/JVI.77.2.1329-1336.2003

K. Van-cleef, J. Van-mierlo, P. Miesen, G. Overheul, J. Fros et al., entomobirnaviruses suppress dsRNA- and siRNA-induced RNAi, Nucleic Acids Research, vol.42, issue.13, pp.8732-8744, 2014.
DOI : 10.1093/nar/gku528

J. Vargason, G. Szittya, J. Burgyán, and T. Hall, Size Selective Recognition of siRNA by an RNA Silencing Suppressor, Cell, vol.115, issue.7, pp.799-811, 2003.
DOI : 10.1016/S0092-8674(03)00984-X

URL : http://doi.org/10.1016/s0092-8674(03)00984-x

P. Kakumani, S. Ponia, S. Rk, V. Sood, M. Chinnappan et al., Role of RNA Interference (RNAi) in Dengue Virus Replication and Identification of NS4B as an RNAi Suppressor, Journal of Virology, vol.87, issue.16, pp.8870-888302774, 2013.
DOI : 10.1128/JVI.02774-12

J. Brennecke, A. Aravin, A. Stark, M. Dus, M. Kellis et al., Discrete Small RNA-Generating Loci as Master Regulators of Transposon Activity in Drosophila, Cell, vol.128, issue.6, pp.1089-1103, 2007.
DOI : 10.1016/j.cell.2007.01.043

E. Morazzani, M. Wiley, M. Murreddu, Z. Adelman, and K. Myles, Production of Virus-Derived Ping-Pong-Dependent piRNA-like Small RNAs in the Mosquito Soma, PLoS Pathogens, vol.38, issue.1, 2012.
DOI : 10.1371/journal.ppat.1002470.s005

N. Vodovar, A. Bronkhorst, K. Van-cleef, P. Miesen, H. Blanc et al., Arbovirus-Derived piRNAs Exhibit a Ping-Pong Signature in Mosquito Cells, PLoS ONE, vol.14, issue.1, p.30861, 2012.
DOI : 10.1371/journal.pone.0030861.t001

URL : https://hal.archives-ouvertes.fr/pasteur-01379361

K. Saito, K. Nishida, T. Mori, Y. Kawamura, K. Miyoshi et al., Specific association of Piwi with rasiRNAs derived from retrotransposon and heterochromatic regions in the Drosophila genome, Genes & Development, vol.20, issue.16, pp.2214-2222, 2006.
DOI : 10.1101/gad.1454806

L. Gunawardane, K. Saito, K. Nishida, K. Miyoshi, Y. Kawamura et al., A Slicer-Mediated Mechanism for Repeat-Associated siRNA 5' End Formation in Drosophila, Science, vol.315, issue.5818, pp.1587-1590, 2007.
DOI : 10.1126/science.1140494

M. Siomi, K. Sato, D. Pezic, and A. Aravin, PIWI-interacting small RNAs: the vanguard of genome defence, Nature Reviews Molecular Cell Biology, vol.103, issue.4, pp.246-258, 2011.
DOI : 10.1073/pnas.0509333103

C. Malone, J. Brennecke, M. Dus, A. Stark, W. Mccombie et al., Specialized piRNA Pathways Act in Germline and Somatic Tissues of the Drosophila Ovary, Cell, vol.137, issue.3, pp.522-535, 2009.
DOI : 10.1016/j.cell.2009.03.040

A. Hess, A. Prasad, A. Ptitsyn, G. Ebel, K. Olson et al., Small RNA profiling of dengue virusmosquito interactions implicates the piwi RNA pathway in anti-viral defense, BMC Microbiol, vol.11, issue.45, 2011.

P. Miesen, E. Girardi, and R. Van-rij, mosquito cells, Nucleic Acids Research, vol.43, issue.13, pp.6545-6556, 2015.
DOI : 10.1093/nar/gkv590

URL : https://hal.archives-ouvertes.fr/pasteur-01379361

P. Miesen, A. Ivens, A. Buck, and R. Van-rij, Small RNA Profiling in Dengue Virus 2-Infected Aedes Mosquito Cells Reveals Viral piRNAs and Novel Host miRNAs, PLOS Neglected Tropical Diseases, vol.40, issue.Unit 19, 2016.
DOI : 10.1371/journal.pntd.0004452.s007

URL : http://doi.org/10.1371/journal.pntd.0004452

L. Sabin, Q. Zheng, P. Thekkat, Y. J. Hannon, G. Gregory et al., Dicer-2 Processes Diverse Viral RNA Species, PLoS ONE, vol.66, issue.2, p.55458, 2013.
DOI : 10.1371/journal.pone.0055458.s010

URL : http://doi.org/10.1371/journal.pone.0055458

Y. Himeidan, E. Kweka, M. Mahgoub, A. Ouma, and J. , Recent outbreaks of Rift Valley fever in East Africa and the Middle East. Front Public Health 2:169. https, 2014.

N. Gauliard, A. Billecocq, R. Flick, and M. Bouloy, Rift Valley fever virus noncoding regions of L, M and S segments regulate RNA synthesis, Virology, vol.351, issue.1, pp.170-179, 2006.
DOI : 10.1016/j.virol.2006.03.018

URL : http://doi.org/10.1016/j.virol.2006.03.018

T. Ikegami, S. Won, C. Peters, and S. Makino, Characterization of Rift Valley Fever Virus Transcriptional Terminations, Journal of Virology, vol.81, issue.16, pp.8421-8438, 2007.
DOI : 10.1128/JVI.02641-06

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1951372

C. Albariño, B. Bird, and S. Nichol, A Shared Transcription Termination Signal on Negative and Ambisense RNA Genome Segments of Rift Valley Fever, Sandfly Fever Sicilian, and Toscana Viruses, Journal of Virology, vol.81, issue.10, pp.5246-5256, 2007.
DOI : 10.1128/JVI.02778-06

E. Lara, A. Billecocq, P. Leger, and M. Bouloy, Characterization of Wild-Type and Alternate Transcription Termination Signals in the Rift Valley Fever Virus Genome, Journal of Virology, vol.85, issue.23, pp.12134-12145, 2011.
DOI : 10.1128/JVI.05322-11

S. Linsen, E. De-wit, G. Janssens, S. Heater, L. Chapman et al., Limitations and possibilities of small RNA digital gene expression profiling, Nature Methods, vol.329, issue.7, pp.474-476, 2009.
DOI : 10.1042/bj3290579

S. Cherry, Genomic RNAi screening in Drosophila S2 cells: what have we learned about host???pathogen interactions?, Current Opinion in Microbiology, vol.11, issue.3, pp.262-270, 2008.
DOI : 10.1016/j.mib.2008.05.007

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2525573

N. Buchon, N. Silverman, and S. Cherry, Immunity in Drosophila melanogaster ??? from microbial recognition to whole-organism physiology, Nature Reviews Immunology, vol.105, issue.12, pp.796-810, 2014.
DOI : 10.1038/nature10356

S. Cherry, RNAi Screening for Host Factors Involved in Viral Infection Using Drosophila Cells, Methods Mol Biol, vol.721, pp.375-382, 2011.
DOI : 10.1007/978-1-61779-037-9_23

D. Brackney, J. Scott, F. Sagawa, J. Woodward, N. Miller et al., C6/36 Aedes albopictus Cells Have a Dysfunctional Antiviral RNA Interference Response, PLoS Neglected Tropical Diseases, vol.36, issue.7, p.856, 2010.
DOI : 10.1371/journal.pntd.0000856.t001

URL : http://doi.org/10.1371/journal.pntd.0000856

M. Petit, V. Mongelli, L. Frangeul, H. Blanc, F. Jiggins et al., piRNA pathway is not required for antiviral defense in Drosophila melano- Dietrich, 2016.
DOI : 10.1073/pnas.1607952113

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4961201

B. Brennan, S. Welch, and R. Elliott, The Consequences of Reconfiguring the Ambisense S Genome Segment of Rift Valley Fever Virus on Viral Replication in Mammalian and Mosquito Cells and for Genome Packaging, PLoS Pathogens, vol.336, issue.2, 2014.
DOI : 10.1371/journal.ppat.1003922.s007

B. Brennan, P. Li, and R. Elliott, Generation and characterization of a recombinant Rift Valley fever virus expressing a V5 epitope-tagged RNA-dependent RNA polymerase, Journal of General Virology, vol.92, issue.12, pp.2906-2913, 2011.
DOI : 10.1099/vir.0.036749-0

Z. Huang, M. Kingsolver, V. Avadhanula, and R. Hardy, An Antiviral Role for Antimicrobial Peptides during the Arthropod Response to Alphavirus Replication, Journal of Virology, vol.87, issue.8, pp.4272-428003360, 2013.
DOI : 10.1128/JVI.03360-12

X. Shi and R. Elliott, Generation and analysis of recombinant Bunyamwera orthobunyaviruses expressing V5 epitope-tagged L proteins, Journal of General Virology, vol.90, issue.2, pp.297-306, 2009.
DOI : 10.1099/vir.0.007567-0

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2885054

A. Lowen, A. Boyd, J. Fazakerley, and R. Elliott, Attenuation of Bunyavirus Replication by Rearrangement of Viral Coding and Noncoding Sequences, Journal of Virology, vol.79, issue.11, pp.6940-6946, 2005.
DOI : 10.1128/JVI.79.11.6940-6946.2005

M. Turell, Reduced Rift Valley Fever Virus Infection Rates in Mosquitoes Associated with Pledget Feedings, The American Journal of Tropical Medicine and Hygiene, vol.39, issue.6, pp.597-602, 1988.
DOI : 10.4269/ajtmh.1988.39.597

E. Gerberg and F. Kutz, A large-scale artificial feeding technique for infecting mosquitoes and its application to screening antimalarial chemicals, J Med Entomol, vol.8, pp.610-612, 1971.

G. Fall, M. Diallo, C. Loucoubar, O. Faye, and A. Sall, Vector Competence of Culex neavei and Culex quinquefasciatus (Diptera: Culicidae) from Senegal for Lineages 1, 2, Koutango and a Putative New Lineage of West Nile Virus, The American Journal of Tropical Medicine and Hygiene, vol.90, issue.4, pp.747-75413, 2014.
DOI : 10.4269/ajtmh.13-0405

J. Saluzzo and J. Smith, Use of reassortant viruses to map attenuating and temperature-sensitive mutations of the Rift Valley fever virus MP-12 vaccine, Vaccine, vol.8, issue.4, pp.369-3750264, 1990.
DOI : 10.1016/0264-410X(90)90096-5

M. Turell and C. Rossi, Potential for Mosquito Transmission of Attenuated Strains of Rift Valley Fever Virus, The American Journal of Tropical Medicine and Hygiene, vol.44, issue.3, pp.278-282, 1991.
DOI : 10.4269/ajtmh.1991.44.278

K. Okamura, A. Ishizuka, H. Siomi, and M. Siomi, Distinct roles for Argonaute proteins in small RNA-directed RNA cleavage pathways, Genes & Development, vol.18, issue.14, pp.1655-1666, 2004.
DOI : 10.1101/gad.1210204

E. Schnettler, M. Sterken, J. Leung, S. Metz, C. Geertsema et al., Noncoding Flavivirus RNA Displays RNA Interference Suppressor Activity in Insect and Mammalian Cells, Journal of Virology, vol.86, issue.24, pp.13486-1350001104, 2012.
DOI : 10.1128/JVI.01104-12

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3503047

H. Li and R. Durbin, Fast and accurate short read alignment with Burrows-Wheeler transform, Bioinformatics, vol.25, issue.14, pp.1754-1760, 2009.
DOI : 10.1093/bioinformatics/btp324

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2705234

R. Team, R:A language and environment for statistical computing. R Foundation for Statistical Computing, 2014.

J. Ongus, E. Roode, C. Pleij, J. Vlak, and M. Van-oers, The 5' non-translated region of Varroa destructor virus 1 (genus Iflavirus): structure prediction and IRES activity in Lymantria dispar cells, Journal of General Virology, vol.87, issue.11, pp.3397-3407, 2006.
DOI : 10.1099/vir.0.82122-0

E. Schnettler, H. Hemmes, R. Goldbach, and M. Prins, The NS3 protein of rice hoja blanca virus suppresses RNA silencing in mammalian cells, Journal of General Virology, vol.89, issue.1, pp.336-340, 2008.
DOI : 10.1099/vir.0.83293-0

P. Karsten, I. Plischke, N. Perrimon, and M. Zeidler, Mutational analysis reveals separable DNA binding and trans-activation of Drosophila STAT92E, Cellular Signalling, vol.18, issue.6, pp.819-829, 2006.
DOI : 10.1016/j.cellsig.2005.07.006

URL : http://pubman.mpdl.mpg.de/pubman/item/escidoc:596411/component/escidoc:596410/284236.pdf

K. Van-cleef, J. Van-mierlo, M. Van-den-beek, and R. Van-rij, Identification of Viral Suppressors of RNAi by a Reporter Assay in Drosophila S2 Cell Culture, Methods Mol Biol, vol.721, pp.201-213978, 2011.
DOI : 10.1007/978-1-61779-037-9_12

J. Van-mierlo, A. Bronkhorst, G. Overheul, S. Sadanandan, J. Ekström et al., Convergent Evolution of Argonaute-2 Slicer Antagonism in Two Distinct Insect RNA Viruses, PLoS Pathogens, vol.8, issue.8, 2012.
DOI : 10.1371/journal.ppat.1002872.s007