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Journal articles
Whole-Genome Sequencing Analysis from the Chikungunya Virus Caribbean Outbreak Reveals Novel Evolutionary Genomic Elements
Kenneth Stapleford
1
Gonzalo Moratorio
1
Rasmus Henningsson
1, 2
Rubing Chen
3
Severine Matheus
4
Antoine Enfissi
4
Daphna Weissglas-Volkov
5
Ofer Isakov
5
Hervé Blanc
1
Bryan C. Mounce
1
Myrielle Dupont-Rouzeyrol
6
Noam Shomron
5
Scott Weaver
3
Magnus Fontes
2
Dominique Rousset
4
Marco Vignuzzi
1, *
*
Corresponding author
Kenneth A Stapleford 1
Author
Gonzalo Moratorio 1
Author
Rasmus Henningsson 1, 2
Author
Rubing Chen 3
Author
Severine Matheus 4
Author
Antoine Enfissi 4
Author
Daphna Weissglas-Volkov 5
Author
Ofer Isakov 5
Author
Hervé Blanc 1
Author
Bryan C. Mounce 1
Author
Myrielle Dupont-Rouzeyrol 6
Author
Noam Shomron 5
Author
Scott Weaver 3
Author
Magnus Fontes 2
Author
Dominique Rousset 4
Author IdHAL : dominique-rousset211 ORCID : https://orcid.org/0000-0002-1473-3147
Marco Vignuzzi 1
Correspondent author
1
Populations virales et Pathogenèse - Viral Populations and Pathogenesis (Département de Virologie, 25-28 rue du docteur Roux, 75724 Paris cedex 15 - France)
- Institut Pasteur [Paris] (25-28, rue du docteur Roux, 75724 Paris cedex 15 - France)
- CNRS - Centre National de la Recherche Scientifique : UMR3569 (France)
2
IGDA - International Group for Data Analysis (C3BI, 25-28 rue du Docteur Roux, 75724 Paris Cedex 15 - France)
- Institut Pasteur [Paris] (25-28, rue du docteur Roux, 75724 Paris cedex 15 - France)
3
UTMB - The University of Texas Medical Branch (Galveston, Texas - United States)
4
Institut Pasteur de la Guyane (23 Avenue Pasteur BP 6010 - 97306 Cayenne Cedex - French Guiana)
- RIIP - Réseau International des Instituts Pasteur (25, rue du Dr Roux 75724 Paris Cedex 15 - France)
5
Sackler Faculty of Medicine (Tel Aviv 69978 - Israel)
- Tel Aviv University [Tel Aviv] (P.O. Box 39040, Tel Aviv 6997801 - Israel)
6
Institut Pasteur de Nouvelle-Calédonie (B.P. 61 98845 Nouméa - New Caledonia)
- RIIP - Réseau International des Instituts Pasteur (25, rue du Dr Roux 75724 Paris Cedex 15 - France)
Abstract : Chikungunya virus (CHIKV), an alphavirus and member of the Togaviridae family, is capable of causing severe febrile disease in humans. In December of 2013 the Asian Lineage of CHIKV spread from the Old World to the Americas, spreading rapidly throughout the New World. Given this new emergence in naïve populations we studied the viral genetic diversity present in infected individuals to understand how CHIKV may have evolved during this continuing outbreak.
Document type :
Journal articles
Complete list of metadata
https://hal-riip.archives-ouvertes.fr/pasteur-01634324
Contributor : Elodie Calvez <>
Submitted on : Tuesday, November 14, 2017 - 5:23:51 AM
Last modification on : Thursday, February 25, 2021 - 2:32:21 PM
Contributor : Elodie Calvez <>
Submitted on : Tuesday, November 14, 2017 - 5:23:51 AM
Last modification on : Thursday, February 25, 2021 - 2:32:21 PM
File
journal.pntd.0004402.pdf
Publication funded by an institution
Identifiers
- HAL Id : pasteur-01634324, version 1
- DOI : 10.1371/journal.pntd.0004402
- PUBMED : 26807575
Collections
RIIP | CNRS | RIIP_GUYANE | RIIP_NOUVELLECALEDONIE | PASTEUR | INSERM
Citation
Kenneth Stapleford, Gonzalo Moratorio, Rasmus Henningsson, Rubing Chen, Severine Matheus, et al.. Whole-Genome Sequencing Analysis from the Chikungunya Virus Caribbean Outbreak Reveals Novel Evolutionary Genomic Elements. PLoS Neglected Tropical Diseases, Public Library of Science, 2016, 10 (1), pp.e0004402. ⟨10.1371/journal.pntd.0004402⟩. ⟨pasteur-01634324⟩