J. H. Yen and A. Barr, New Hypothesis of the Cause of Cytoplasmic Incompatibility in Culex pipiens L., Nature, vol.8, issue.5313, pp.657-658, 1971.
DOI : 10.1038/232657a0

D. Poinsot, S. Charlat, and H. Merçot, -induced cytoplasmic incompatibility: Confronting the models with the facts, BioEssays, vol.48, issue.3, pp.259-265, 2003.
DOI : 10.2307/2410244

L. D. Hurst, The evolution of cytoplasmic incompatibility or when spite can be successful, Journal of Theoretical Biology, vol.148, issue.2, pp.269-277, 1991.
DOI : 10.1016/S0022-5193(05)80344-3

J. Foster, The Wolbachia Genome of Brugia malayi: Endosymbiont Evolution within a Human Pathogenic Nematode, PLoS Biology, vol.15, issue.1450, pp.599-0614, 2005.
DOI : 10.1371/journal.pbio.0030121.t003

S. Siozios, The Diversity and Evolution of Wolbachia Ankyrin Repeat Domain Genes, PLoS ONE, vol.4, issue.2, p.55390, 2013.
DOI : 10.1371/journal.pone.0055390.s008

S. G. Sedgwick and S. J. Smerdon, The ankyrin repeat: a diversity of interactions on a common structural framework, Trends in Biochemical Sciences, vol.24, issue.8, pp.311-316, 1999.
DOI : 10.1016/S0968-0004(99)01426-7

O. Duron, Variability and Expression of Ankyrin Domain Genes in Wolbachia Variants Infecting the Mosquito Culex pipiens, Journal of Bacteriology, vol.189, issue.12, pp.4442-4448, 2007.
DOI : 10.1128/JB.00142-07

URL : https://hal.archives-ouvertes.fr/halsde-00424353

J. F. Beckmann and A. M. Fallon, Detection of the Wolbachia protein WPIP0282 in mosquito spermathecae: Implications for cytoplasmic incompatibility, Insect Biochemistry and Molecular Biology, vol.43, issue.9, pp.867-878, 2013.
DOI : 10.1016/j.ibmb.2013.07.002

J. F. Beckmann, J. A. Ronau, M. Hochstrasser, D. Tillett, and K. A. Ginalski, A Wolbachia deubiquitylating enzyme induces cytoplasmic incompatibility, Nature Microbiology, vol.110, p.17007, 2017.
DOI : 10.1038/ncomms5763

URL : http://europepmc.org/articles/pmc5336136?pdf=render

D. P. Lepage, Prophage WO genes recapitulate and enhance Wolbachia-induced cytoplasmic incompatibility, Nature, vol.44, issue.7644, pp.243-247, 2017.
DOI : 10.1093/nar/gkv1145

E. R. Sutton, S. R. Harris, J. Parkhill, and S. P. Sinkins, Comparative genome analysis of Wolbachia strain wAu, BMC Genomics, vol.15, issue.1, p.928, 2014.
DOI : 10.1016/0378-1119(95)00657-5

C. M. Atyame, Wolbachia Divergence and the Evolution of Cytoplasmic Incompatibility in Culex pipiens, PLoS ONE, vol.15, issue.3, pp.21-26, 2014.
DOI : 10.1371/journal.pone.0087336.s001

C. M. Atyame, Multiple Wolbachia determinants control the evolution of cytoplasmic incompatibilities in Culex pipiens mosquito populations, Molecular Ecology, vol.178, issue.Pt 2, pp.286-298, 2011.
DOI : 10.1111/j.0014-3820.2004.tb01594.x

URL : https://hal.archives-ouvertes.fr/hal-00649573

C. M. Atyame, F. Delsuc, N. Pasteur, M. Weill, and O. Duron, Diversification of Wolbachia Endosymbiont in the Culex pipiens Mosquito, Molecular Biology and Evolution, vol.232, issue.5313, pp.2761-2772, 2011.
DOI : 10.1038/232657a0

I. Nor, On the Genetic Architecture of Cytoplasmic Incompatibility: Inference from Phenotypic Data, The American Naturalist, vol.182, issue.1, pp.15-24, 2013.
DOI : 10.1086/670612

URL : https://hal.archives-ouvertes.fr/hal-00837003

L. Klasson, Genome Evolution of Wolbachia Strain wPip from the Culex pipiens Group, Molecular Biology and Evolution, vol.17, issue.9, pp.1877-1887, 2008.
DOI : 10.1093/bioinformatics/17.9.847

L. Baldo, Multilocus Sequence Typing System for the Endosymbiont Wolbachia pipientis, Applied and Environmental Microbiology, vol.72, issue.11, pp.7098-7110, 2006.
DOI : 10.1128/AEM.00731-06

N. Lo, Taxonomic status of the intracellular bacterium Wolbachia pipientis, INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, vol.57, issue.3, pp.654-657, 2007.
DOI : 10.1099/ijs.0.64515-0

J. L. Pons and G. Labesse, @TOME-2: a new pipeline for comparative modeling of protein-ligand complexes, Nucleic Acids Research, vol.17, issue.1, pp.485-491, 2009.
DOI : 10.1002/prot.21883

M. A. Andrade, C. Perez-iratxeta, and C. P. Ponting, Protein Repeats: Structures, Functions, and Evolution, Journal of Structural Biology, vol.134, issue.2-3, pp.117-131, 2001.
DOI : 10.1006/jsbi.2001.4392

S. R. Bordenstein, M. L. Marshall, A. J. Fry, U. Kim, and J. J. Wernegreen, The Tripartite Associations between Bacteriophage, Wolbachia, and Arthropods, PLoS Pathogens, vol.9, issue.5, p.43, 2006.
DOI : 1531-7714(2004)009[0001:TPOOAW]2.0.CO;2

URL : http://journals.plos.org/plospathogens/article/file?id=10.1371/journal.ppat.0020043&type=printable

J. D. Wright, F. S. Sjostrand, J. K. Portaro, and A. Barr, The ultrastructure of the rickettsia-like microorganism Wolbachia pipientis and Associated virus-like bodies in the mosquito Culex pipiens, Journal of Ultrastructure Research, vol.63, issue.1, pp.79-85, 1978.
DOI : 10.1016/S0022-5320(78)80046-X

C. D. Aakre, Evolving New Protein-Protein Interaction Specificity through Promiscuous Intermediates, Cell, vol.163, issue.3, pp.594-606, 2015.
DOI : 10.1016/j.cell.2015.09.055

URL : https://doi.org/10.1016/j.cell.2015.09.055

E. Dumas, Population structure of Wolbachia and cytoplasmic introgression in a complex of mosquito species, BMC Evolutionary Biology, vol.13, issue.1, p.181, 2013.
DOI : 10.1111/j.1420-9101.2005.00938.x

K. M. Ellegaard, L. Klasson, K. Näslund, K. Bourtzis, and S. G. Andersson, Comparative Genomics of Wolbachia and the Bacterial Species Concept, PLoS Genetics, vol.286, issue.1, p.1003381, 2013.
DOI : 10.1371/journal.pgen.1003381.s017

M. Gouy, S. Guindon, and O. Gascuel, SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building, Molecular Biology and Evolution, vol.24, issue.8, pp.221-224, 2010.
DOI : 10.1093/molbev/msm092

URL : https://hal.archives-ouvertes.fr/lirmm-00705187

D. Bryant and V. Moulton, Neighbor-Net: An Agglomerative Method for the Construction of Phylogenetic Networks, Molecular Biology and Evolution, vol.21, issue.2, pp.255-265, 2004.
DOI : 10.1093/molbev/msh018

D. H. Huson and D. Bryant, Application of Phylogenetic Networks in Evolutionary Studies, Molecular Biology and Evolution, vol.23, issue.2, pp.254-267, 2006.
DOI : 10.1101/gr.1347404

C. Paraskevopoulos, S. R. Bordenstein, J. J. Wernegreen, J. H. Werren, and K. Bourtzis, Toward a Wolbachia Multilocus Sequence Typing System: Discrimination of Wolbachia Strains Present in Drosophila Species, Current Microbiology, vol.5, issue.Pt 1, pp.388-395, 2006.
DOI : 10.1093/oxfordjournals.molbev.a026338