M. Onis, WHO child growth standards based on length/height, weight and age, Acta Paediatr, vol.95, pp.76-85, 2006.

W. Group and . Standards, Head circumference-for-age, arm circumference-for-age, triceps skinfold-for-age and subscapular skinfold-forage: methods and development [Internet]. Geneva: World Health ?, p.5, 2007.

, Enquête nationale sur le suivi des objectifs du millénaire pour le développement à Madagascar, IMASIHWIMP, 2013.

K. G. Dewey and K. Begum, Long-term consequences of stunting in early life, Matern Child Nutr, vol.7, pp.5-18, 2011.

L. S. Adair, Long-term consequences of nutrition and growth in early childhood and possible preventive interventions. International nutrition: achieving millennium goals and beyond, Basel: S. KARGER AG

U. E. Schaible and S. Kaufmann, Malnutrition and infection: complex mechanisms and global impacts, PLoS Med, vol.4, p.115, 2007.

A. Z. Wang, R. J. Shulman, A. H. Crocker, C. Thakwalakwa, K. M. Maleta et al., A combined intervention of zinc, multiple micronutrients, and Albendazole does not ameliorate environmental enteric dysfunction or stunting in rural Malawian children in a double-blind randomized controlled trial, J Nutr, vol.147, pp.97-103, 2017.

M. De-onis and F. Branca, Childhood stunting: a global perspective, Matern Child Nutr, vol.12, pp.12-26, 2016.

C. P. Stewart, L. Iannotti, K. G. Dewey, K. F. Michaelsen, and A. W. Onyango, Contextualising complementary feeding in a broader framework for stunting prevention. Maternal and Child Nutrition, vol.9, pp.27-45, 2013.

. Childhoodstunting_colloquium_14oct_conceptualframework_colour,

K. G. Dewey and S. Adu-afarwuah, Systematic review of the efficacy and effectiveness of complementary feeding interventions in developing countries, Matern Child Nutr, vol.4, pp.24-85, 2008.

P. G. Lunn, C. A. Northrop-clewes, and R. M. Downes, Intestinal permeability, mucosal injury, and growth faltering in Gambian infants, Lancet, vol.338, pp.907-917, 1991.

N. W. Solomons, Environmental contamination and chronic inflammation influence human growth potential, J Nutr, vol.133, p.1237, 2003.
DOI : 10.1093/jn/133.5.1237

URL : https://academic.oup.com/jn/article-pdf/133/5/1237/24181248/4w0503001237.pdf

S. Mckay, E. Gaudier, D. I. Campbell, A. M. Prentice, and R. Albers, Environmental enteropathy: new targets for nutritional interventions, Int Health, vol.2, pp.172-80, 2010.

A. A. Gilmartin and W. A. Petri, Exploring the role of environmental enteropathy in malnutrition, infant development and oral vaccine response, Philos Trans R Soc Lond Ser B Biol Sci, vol.370, 2015.

T. Morita, J. Perin, L. Oldja, S. Biswas, R. B. Sack et al., Mouthing of soil contaminated objects is associated with environmental enteropathy in young children, Tropical Med Int Health, vol.22, pp.670-678, 2017.

C. M. George, L. Oldja, S. Biswas, J. Perin, G. O. Lee et al., Geophagy is associated with environmental enteropathy and stunting in children in rural Bangladesh, Am J Trop Med Hyg, vol.92, pp.1117-1141, 2015.
DOI : 10.4269/ajtmh.14-0672

URL : http://www.ajtmh.org/deliver/fulltext/14761645/92/6/1117.pdf?itemId=/content/journals/10.4269/ajtmh.14-0672&mimeType=pdf&containerItemId=content/journals/14761645

J. Perin, A. Thomas, L. Oldja, S. Ahmed, T. Parvin et al., Geophagy is associated with growth faltering in children in rural Bangladesh, J Pediatr, vol.178, pp.34-39, 2016.
DOI : 10.1016/j.jpeds.2016.06.077

C. M. George, L. Oldja, S. Biswas, J. Perin, R. B. Sack et al., Unsafe child feces disposal is associated with environmental Enteropathy and impaired growth, J Pediatr, vol.176, pp.43-52, 2016.
DOI : 10.1016/j.jpeds.2016.05.035

C. M. George, L. Oldja, S. K. Biswas, J. Perin, G. O. Lee et al., Fecal markers of environmental enteropathy are associated with animal exposure and caregiver hygiene in Bangladesh, Am J Trop Med Hyg, vol.93, pp.269-75, 2015.

K. Watanabe and W. A. Petri, Environmental enteropathy: elusive but significant subclinical abnormalities in developing countries, EBioMedicine, vol.10, pp.25-32, 2016.
DOI : 10.1016/j.ebiom.2016.07.030

URL : https://doi.org/10.1016/j.ebiom.2016.07.030

P. S. Korpe and W. A. Petri, Environmental enteropathy: critical implications of a poorly understood condition, Trends Mol Med, vol.18, pp.328-364, 2012.
DOI : 10.1016/j.molmed.2012.04.007

URL : http://europepmc.org/articles/pmc3372657?pdf=render

A. Prendergast and P. Kelly, Enteropathies in the developing world: neglected effects on global health, Am J Trop Med Hyg, vol.86, pp.756-63, 2012.
DOI : 10.4269/ajtmh.2012.11-0743

URL : http://www.ajtmh.org/deliver/fulltext/14761645/86/5/756.pdf?itemId=/content/journals/10.4269/ajtmh.2012.11-0743&mimeType=pdf&containerItemId=content/journals/14761645

G. T. Keusch, I. H. Rosenberg, D. M. Denno, C. Duggan, R. L. Guerrant et al., Implications of acquired environmental enteric dysfunction for growth and stunting in infants and children living in low-and middle-income countries, Food Nutr Bull, vol.34, pp.357-64, 2013.

A. J. Prendergast and J. H. Humphrey, The stunting syndrome in developing countries, Paediatr Int Child Health, vol.34, pp.250-65, 2014.
DOI : 10.1179/2046905514y.0000000158

URL : https://www.tandfonline.com/doi/pdf/10.1179/2046905514Y.0000000158?needAccess=true

T. Ahmed, D. Auble, J. A. Berkley, R. Black, P. P. Ahern et al., An evolving perspective about the origins of childhood undernutrition and nutritional interventions that includes the gut microbiome, Ann N Y Acad Sci, vol.1332, pp.22-38, 2014.

E. M. Brown, M. Wlodarska, B. P. Willing, P. Vonaesch, J. Han et al., Diet and specific microbial exposure trigger features of environmental enteropathy in a novel murine model, Nat Commun, vol.6, p.7806, 2015.

J. Louis-auguste and P. Kelly, Tropical enteropathies, Curr Gastroenterol Rep, vol.19, p.29, 2017.
DOI : 10.1007/s11894-017-0570-0

URL : https://doi.org/10.1007/s11894-017-0570-0

M. B. Arndt, B. A. Richardson, T. Ahmed, M. Mahfuz, R. Haque et al., Fecal markers of environmental enteropathy and subsequent growth in Bangladeshi children, Am J Trop Med Hyg, vol.95, pp.694-701, 2016.

K. M. Harper, M. Mutasa, A. J. Prendergast, J. Humphrey, and A. R. Manges, Environmental enteric dysfunction pathways and child stunting: a systematic review, PLoS Negl Trop Dis, vol.12, p.6205, 2018.
DOI : 10.1371/journal.pntd.0006205

URL : http://journals.plos.org/plosntds/article/file?id=10.1371/journal.pntd.0006205&type=printable

P. Kelly, I. Menzies, R. Crane, I. Zulu, C. Nickols et al., Responses of small intestinal architecture and function over time to environmental factors in a tropical population, Am J Trop Med Hyg, vol.70, pp.412-421, 2004.

P. Kelly, E. Besa, K. Zyambo, J. Louis-auguste, J. Lees et al., Endomicroscopic and Transcriptomic analysis of impaired barrier function and malabsorption in environmental enteropathy, PLoS Negl Trop Dis, vol.10, p.4600, 2016.
DOI : 10.1371/journal.pntd.0004600

URL : https://journals.plos.org/plosntds/article/file?id=10.1371/journal.pntd.0004600&type=printable

G. O. Lee, B. Mccormick, J. C. Seidman, M. N. Kosek, R. Haque et al., Infant nutritional status, feeding practices, enteropathogen exposure, socioeconomic status, and illness are associated with gut barrier function as assessed by the lactulose mannitol test in the MAL-ED birth cohort, Am J Trop Med Hyg, vol.97, pp.281-90, 2017.

C. M. George, V. Burrowes, J. Perin, L. Oldja, S. Biswas et al., Enteric infections in young children are associated with environmental enteropathy and impaired growth, Tropical Med Int Health, vol.23, pp.26-33, 2018.
DOI : 10.1111/tmi.13002

URL : https://onlinelibrary.wiley.com/doi/pdf/10.1111/tmi.13002

E. T. Rogawski, R. L. Guerrant, A. Havt, I. Lima, P. Medeiros et al., Epidemiology of enteroaggregative Escherichia coli infections and associated outcomes in the MAL-ED birth, PLoS Negl Trop Dis, vol.11, p.5798, 2017.

T. S. Steiner, A. A. Lima, J. P. Nataro, and R. L. Guerrant, Enteroaggregative Escherichia coli produce intestinal inflammation and growth impairment and cause interleukin-8 release from intestinal epithelial cells, J Infect Dis, vol.177, pp.88-96, 1998.
DOI : 10.1086/513809

URL : https://academic.oup.com/jid/article-pdf/177/1/88/2541253/177-1-88.pdf

J. Lindenbaum, C. D. Gerson, and T. H. Kent, Recovery of small-intestinal structure and function after residence in the tropics. I. Studies in peace corps volunteers, Ann Intern Med, vol.74, pp.218-240, 1971.

C. D. Gerson, T. H. Kent, J. R. Saha, N. Siddiqi, and J. Lindenbaum, Recovery of small-intestinal structure and function after residence in the tropics. II Studies in Indians and Pakistanis living in New York City, Ann Intern Med, vol.75, pp.41-49, 1971.

A. L. Kau, J. D. Planer, J. Liu, S. Rao, T. Yatsunenko et al., Functional characterization of IgA-targeted bacterial taxa from undernourished Malawian children that produce diet-dependent enteropathy, Sci Transl Med, vol.7, pp.276-300, 2015.
DOI : 10.1126/scitranslmed.aaa4877

URL : http://europepmc.org/articles/pmc4423598?pdf=render

L. V. Blanton, M. R. Charbonneau, T. Salih, M. J. Barratt, S. Venkatesh et al., Gut bacteria that prevent growth impairments transmitted by microbiota from Fur children, Science, vol.351, p.3311, 2016.
DOI : 10.1126/science.aad3311

URL : https://science.sciencemag.org/content/sci/351/6275/aad3311.full.pdf

H. G. Desai, A. V. Borkar, S. M. Pathare, P. K. Dighe, and K. N. Jeejeebhoy, Flat" jejunal mucosa in the tropics, Indian J Med Sci, vol.23, pp.1-5, 1969.

C. J. Chacko, K. A. Paulson, V. I. Mathan, and S. J. Baker, The villus architecture of the small intestine in the tropics: a necropsy study, J Pathol, vol.98, pp.146-51, 1969.

U. Fagundes-neto, M. C. Martins, F. L. Lima, F. R. Patrício, and M. R. Toledo, Asymptomatic environmental enteropathy among slum-dwelling infants, J Am Coll Nutr, vol.13, pp.51-57, 1994.

U. Fagundes-neto, M. R. Kallas, and F. R. Patrício, Morphometric study of the small bowel mucosa in infants with diarrhea due to enteropathogenic Escherichia coli strains, Hepato-Gastroenterology, vol.44, pp.1051-1057, 1997.

M. R. Kallas, F. R. Patrício, and U. Fagundes-neto, Morphometrics of the small intestine in children with diarrhea due to classical enteropathogenic Escherichia coli and to environmental asymptomatic enteropathy, Rev Assoc Med Bras, vol.41, pp.162-168, 1992.

D. I. Campbell, S. H. Murch, M. Elia, P. B. Sullivan, M. S. Sanyang et al., Chronic T cell-mediated enteropathy in rural West African children: relationship with nutritional status and small bowel function, Pediatr Res, vol.54, pp.306-317, 2003.

D. I. Campbell, M. Elia, and P. G. Lunn, Growth faltering in rural Gambian infants is associated with impaired small intestinal barrier function, leading to endotoxemia and systemic inflammation, J Nutr, vol.133, pp.1332-1340, 2003.

G. O. Lee, M. P. Olortegui, M. S. Salas, P. P. Yori, D. R. Trigoso et al., Environmental enteropathy is associated with cardiometabolic risk factors in Peruvian children, J Dev Orig Health Dis, vol.8, pp.337-385, 2017.

M. I. Ordiz, K. Stephenson, S. Agapova, K. M. Wylie, K. Maleta et al., Environmental enteric dysfunction and the fecal microbiota in Malawian children, Am J Trop Med Hyg, vol.96, pp.473-479, 2017.

M. Investigators, The MAL-ED study: a multinational and multidisciplinary approach to understand the relationship between enteric pathogens, malnutrition, gut physiology, physical growth, cognitive development, and immune responses in infants and children up to 2 years of age in resource-poor environments, Clin Infect Dis, vol.59, issue.4, pp.193-206, 2014.

J. R. Donowitz, R. Haque, B. D. Kirkpatrick, M. Alam, M. Lu et al., Small intestine bacterial overgrowth and environmental enteropathy in Bangladeshi children, MBio, vol.7, pp.2102-2117, 2016.
DOI : 10.1128/mbio.02102-15

URL : https://mbio.asm.org/content/7/1/e02102-15.full.pdf

M. Lu, J. Zhou, C. Naylor, B. D. Kirkpatrick, R. Haque et al., Application of penalized linear regression methods to the selection of environmental enteropathy biomarkers, Biomark Res, vol.5, p.9, 2017.

R. L. Guerrant, Á. M. Leite, R. Pinkerton, P. Medeiros, P. A. Cavalcante et al., Biomarkers of environmental enteropathy, inflammation, stunting, and impaired growth in children in Northeast Brazil, PLoS ONE, vol.11, p.158772, 2016.

M. Johansson, J. K. Gustafsson, J. Holmén-larsson, K. S. Jabbar, L. Xia et al., Bacteria penetrate the normally impenetrable inner colon mucus layer in both murine colitis models and patients with ulcerative colitis, Gut, vol.63, pp.281-91, 2014.

R. Sherwood and N. Walsham, Fecal calprotectin in inflammatory bowel disease, Clin Exp Gastroenterol, vol.9, pp.21-30, 2016.

R. Lagos, A. Fasano, S. S. Wasserman, V. Prado, S. Martin et al., Effect of small bowel bacterial overgrowth on the immunogenicity of single-dose live oral cholera vaccine CVD 103-HgR, J Infect Dis, vol.180, pp.1709-1721, 1999.

I. Trehan, R. J. Shulman, C. Ou, K. Maleta, and M. J. Manary, A randomized, doubleblind, placebo-controlled trial of rifaximin, a nonabsorbable antibiotic, in the treatment of tropical enteropathy, Am J Gastroenterol, vol.104, pp.2326-2359, 2009.

L. Galpin, M. J. Manary, K. Fleming, C. Ou, P. Ashorn et al., Effect of lactobacillus GG on intestinal integrity in Malawian children at risk of tropical enteropathy, Am J Clin Nutr, vol.82, pp.1040-1045, 2005.

J. H. Humphrey, A. D. Jones, A. Manges, G. Mangwadu, and J. A. Maluccio, The Sanitation Hygiene Infant Nutrition Efficacy (SHINE) Trial: Rationale, Design, and Methods, Clin Infect Dis, vol.61, issue.7, pp.685-702, 2015.

B. D. Kirkpatrick, E. R. Colgate, J. C. Mychaleckyj, R. Haque, D. M. Dickson et al., The "Performance of Rotavirus and Oral Polio Vaccines in Developing Countries" (PROVIDE) study: description of methods of an interventional study designed to explore complex biologic problems, Am J Trop Med Hyg, vol.92, pp.744-51, 2015.

E. Angelakis, F. Armougom, F. Carrière, D. Bachar, R. Laugier et al., A metagenomic investigation of the duodenal microbiota reveals links with obesity, PLoS ONE, vol.10, p.137784, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01237967

G. Li, M. Yang, K. Zhou, L. Zhang, L. Tian et al., Diversity of duodenal and rectal microbiota in biopsy tissues and luminal contents in healthy volunteers, J Microbiol Biotechnol, vol.25, pp.1136-1181, 2015.

E. T. Hillman, H. Lu, T. Yao, and C. H. Nakatsu, Microbial ecology along the gastrointestinal tract, Microbes Environ, vol.32, pp.300-313, 2017.

I. Sekirov, N. M. Tam, M. Jogova, M. L. Robertson, Y. Li et al., Antibioticinduced perturbations of the intestinal microbiota alter host susceptibility to enteric infection, Infect Immun, vol.76, pp.4726-4762, 2008.

S. R. Modi, J. J. Collins, and D. A. Relman, Antibiotics and the gut microbiota, J Clin Invest, vol.124, pp.4212-4220, 2014.

L. Dethlefsen, S. Huse, M. L. Sogin, and D. A. Relman, The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing, PLoS Biol, vol.6, p.280, 2008.

D. A. Hill, C. Hoffmann, M. C. Abt, Y. Du, D. Kobuley et al., Metagenomic analyses reveal antibiotic-induced temporal and spatial changes in intestinal microbiota with associated alterations in immune cell homeostasis, Mucosal Immunol, vol.3, pp.148-58, 2010.

M. I. Smith, T. Yatsunenko, M. J. Manary, I. Trehan, R. Mkakosya et al., Gut microbiomes of Malawian twin pairs discordant for kwashiorkor, Science, vol.339, pp.548-54, 2013.

M. Hasan, B. Beitz, V. Rouilly, V. Libri, A. Urrutia et al., Semi-automated and standardized cytometric procedures for multi-panel and multi-parametric whole blood immunophenotyping, Clin Immunol, vol.157, pp.261-76, 2015.
URL : https://hal.archives-ouvertes.fr/pasteur-01380961

D. Duffy, V. Rouilly, V. Libri, M. Hasan, B. Beitz et al., Functional analysis via standardized whole-blood stimulation systems defines the boundaries of a healthy immune response to complex stimuli, Immunity, vol.40, pp.436-50, 2014.
URL : https://hal.archives-ouvertes.fr/pasteur-01384537

N. Kalach, N. Kapel, W. Castelain, M. Cousin, M. O. Sauvage et al., Intestinal permeability and fecal eosinophil-derived neurotoxin are the best diagnosis tools for digestive non-IgE-mediated cow's milk allergy in toddlers, Clin Chem Lab Med, vol.51, p.351, 2013.

G. O. Lee, P. Kosek, A. Lima, R. Singh, P. P. Yori et al., Lactulose: mannitol diagnostic test by HPLC and LC-MSMS platforms: considerations for field studies of intestinal barrier function and environmental enteropathy, J Pediatr Gastroenterol Nutr, vol.59, pp.544-50, 2014.

A. J. Weisz, M. J. Manary, K. Stephenson, S. Agapova, F. G. Manary et al., Abnormal gut integrity is associated with reduced linear growth in rural Malawian children, J Pediatr Gastroenterol Nutr, vol.55, pp.747-50, 2012.

A. J. Macpherson, M. B. Geuking, E. Slack, S. Hapfelmeier, and K. D. Mccoy, The habitat, double life, citizenship, and forgetfulness of IgA, Immunol Rev, vol.245, pp.132-178, 2012.

E. A. Maier, K. J. Weage, M. M. Guedes, L. A. Denson, M. M. Mcneal et al., Protein-energy malnutrition alters IgA responses to rotavirus vaccination and infection but does not impair vaccine efficacy in mice, Vaccine, vol.32, pp.48-53, 2013.

K. R. Wessells, S. Y. Hess, N. Rouamba, Z. P. Ouédraogo, M. Kellogg et al., Associations between intestinal mucosal function and changes in plasma zinc concentration following zinc supplementation, J Pediatr Gastroenterol Nutr, vol.57, pp.348-55, 2013.

C. Papadia, P. Kelly, S. Caini, G. R. Corazza, T. Shawa et al., Plasma citrulline as a quantitative biomarker of HIV-associated villous atrophy in a tropical enteropathy population, Clin Nutr, vol.29, pp.795-800, 2010.

P. Crenn, B. Messing, and L. Cynober, Citrulline as a biomarker of intestinal failure due to enterocyte mass reduction, Clin Nutr, vol.27, pp.328-367, 2008.

P. Crenn, M. Hanachi, N. Neveux, and L. Cynober, Circulating citrulline levels: a biomarker for intestinal functionality assessment, Ann Biol Clin (Paris), vol.69, pp.513-534, 2011.
URL : https://hal.archives-ouvertes.fr/inserm-00924418

C. M. Mcdonald, K. P. Manji, K. Gosselin, H. Tran, E. Liu et al., Elevations in serum anti-flagellin and anti-LPS Igs are related to growth faltering in young Tanzanian children, Am J Clin Nutr, vol.103, pp.1548-54, 2016.

A. Lin, B. F. Arnold, S. Afreen, R. Goto, T. Huda et al., Household environmental conditions are associated with enteropathy and impaired growth in rural Bangladesh, Am J Trop Med Hyg, vol.89, pp.130-137, 2013.

N. Benzoni, P. Korpe, C. Thakwalakwa, K. Maleta, K. Stephenson et al., Plasma endotoxin core antibody concentration and linear growth are unrelated in rural Malawian children aged 2-5 years, BMC Res Notes, vol.8, p.258, 2015.

B. K. Ritchie, D. R. Brewster, G. P. Davidson, C. D. Tran, Y. Mcneil et al., 13C-sucrose breath test: novel use of a noninvasive biomarker of environmental gut health, Pediatrics, vol.124, pp.620-626, 2009.

J. C. Reis-dos, M. B. Morais, and C. Oliva, Fagundes-Neto U. Breath hydrogen test in the diagnosis of environmental enteropathy in children living in an urban slum, Dig Dis Sci, vol.52, pp.1253-1261, 2007.

J. C. Reis-dos, M. B. Morais, and U. Fagundes-neto, Breath hydrogen test to evaluate lactose absorption and small bowel bacterial overgrowth in children, Arq Gastroenterol, vol.36, pp.169-76, 1999.

U. C. Ghoshal, U. Ghoshal, K. Das, and A. Misra, Utility of hydrogen breath tests in diagnosis of small intestinal bacterial overgrowth in malabsorption syndrome and its relationship with oro-cecal transit time, Indian J Gastroenterol, vol.25, pp.6-10, 2006.

S. Chandra, U. Dutta, M. T. Noor, N. Taneja, R. Kochhar et al., Endoscopic jejunal biopsy culture: a simple and effective method to study jejunal microflora, Indian. J Gastroenterol, vol.29, pp.226-256, 2010.

C. Lifschitz and A. Sieczkowska, New insights into the fecal microbiota of children living in a slum: association with small bowel bacterial overgrowth, J Pediatr

,

C. S. Mello, M. Rodrigues, A. Filho-hb-de, L. Melli, S. Tahan et al., Fecal microbiota analysis of children with small intestinal bacterial overgrowth among residents of an urban slum in Brazil, J Pediatr (Rio J), 2017.

J. M. Ridlon, D. J. Kang, P. B. Hylemon, and J. S. Bajaj, Bile acids and the gut microbiome, Curr Opin Gastroenterol, vol.30, pp.332-340, 2014.

R. D. Semba, M. Gonzalez-freire, R. Moaddel, I. Trehan, K. M. Maleta et al., Environmental enteric dysfunction is associated with altered bile acid metabolism, J Pediatr Gastroenterol Nutr, vol.64, pp.536-576, 2017.

E. K. Gough, D. A. Stephens, E. Moodie, A. J. Prendergast, R. J. Stoltzfus et al., Linear growth faltering in infants is associated with Acidaminococcus sp. and community-level changes in the gut microbiota, Microbiome, vol.3, p.24, 2015.

C. A. Beam, Strategies for improving power in diagnostic radiology research, AJR Am J Roentgenol, vol.159, pp.631-638, 2013.

C. Naylor, M. Lu, R. Haque, D. Mondal, E. Buonomo et al., Environmental enteropathy, oral vaccine failure and growth faltering in infants in Bangladesh, EBioMedicine, vol.2, pp.1759-66, 2015.

C. G. Victora, C. G. Victora, M. De-onis, M. De-onis, P. C. Hallal et al., Worldwide timing of growth faltering: revisiting implications for interventions, Pediatrics, vol.125, pp.473-80, 2010.

T. Yatsunenko, F. E. Rey, M. J. Manary, I. Trehan, M. G. Dominguez-bello et al., Human gut microbiome viewed across age and geography, Nature, vol.486, pp.222-229, 2012.

J. M. Rodríguez, K. Murphy, C. Stanton, R. P. Ross, O. I. Kober et al., The composition of the gut microbiota throughout life, with an emphasis on early life, Microb Ecol Health Dis, vol.26, p.26050, 2015.

T. Sanders, Establishing of gut microbiota and bacterial colonisation of the gut in early life, Nutrition and development. West Sussex, pp.116-145, 2013.

A. M. Prentice, K. A. Ward, G. R. Goldberg, L. M. Jarjou, S. E. Moore et al., Critical windows for nutritional interventions against stunting, Am J Clin Nutr, vol.97, pp.911-919, 2013.

A. Georgiadis and M. E. Penny, Child undernutrition: opportunities beyond the first 1000 days, Lancet Public Health, vol.2, p.399, 2017.

M. N. Kosek, M. Network-investigators, Z. Bhutta, R. Guerrant, E. Houpt et al., Causal pathways from enteropathogens to environmental enteropathy: findings from the MAL-ED birth cohort study, EBioMedicine, vol.18, pp.109-126, 2017.

J. M. Colston, P. Yori, P. Colantuoni, E. Moulton, L. H. Ambikapathi et al., A methodologic framework for modeling and assessing biomarkers of environmental enteropathy as predictors of growth in infants: an example from a Peruvian birth cohort, Am J Clin Nutr, vol.106, pp.245-55, 2017.

P. Vonaesch, M. Anderson, P. Sansonetti, R. V. Randremanana, R. Razafindratsimandresy et al., Etiologies, risk factors and impact of severe diarrhea in the under-fives in Moramanga and Antananarivo, FEMS Microbiol Rev, vol.454, p.158862, 2016.

S. Breurec, N. Vanel, P. Bata, L. Chartier, A. Farra et al., Etiology and epidemiology of diarrhea in hospitalized children from low income country: a matched case-control study in Central African Republic, PLoS Negl Trop Dis, vol.10, p.4283, 2016.

P. Vonaesch, L. Tondeur, S. Breurec, P. Bata, L. Nguyen et al., Factors associated with stunting in healthy children aged 5 years and less living in Bangui (RCA). Wieringa F, editor, PLoS ONE, vol.12, p.182363, 2017.
URL : https://hal.archives-ouvertes.fr/pasteur-01634924

J. R. Donowitz and W. A. Petri, Pediatric small intestine bacterial overgrowth in lowincome countries, Trends Mol Med, vol.21, pp.6-15, 2015.

C. S. Mello, Methane production and small intestinal bacterial overgrowth in children living in a slum, World J Gastroenterol, vol.18, pp.5932-5941, 2012.

K. Bolin, T. D. Duncombe, V. M. Myo-khin, N. Pereira, and S. P. , Epidemiology of small bowel bacterial overgrowth and rice carbohydrate malabsorption in Burmese (Myanmar) village children, Am J Trop Med Hyg, vol.47, pp.298-304, 1992.

J. Yu, M. I. Ordiz, J. Stauber, N. Shaikh, I. Trehan et al., Environmental enteric dysfunction includes a broad spectrum of inflammatory responses and epithelial repair processes, Cell Mol Gastroenterol Hepatol, vol.2, pp.158-174, 2016.

E. P. Parker, S. Ramani, B. A. Lopman, J. A. Church, M. Iturriza-gómara et al., Causes of impaired oral vaccine efficacy in developing countries, Future Microbiol, vol.13, pp.97-118, 2018.

S. Becker-dreps, S. Vilchez, F. Bucardo, E. Twitchell, W. S. Choi et al., The association between fecal biomarkers of environmental enteropathy and rotavirus vaccine response in Nicaraguan infants, Pediatr Infect Dis J, vol.36, pp.412-418, 2017.

R. B. Oriá, L. E. Murray-kolb, R. J. Scharf, L. L. Pendergast, D. R. Lang et al., Early-life enteric infections: relation between chronic systemic inflammation and poor cognition in children, Nutr Rev, vol.74, pp.374-86, 2016.

V. Guernier, B. Brennan, L. Yakob, G. Milinovich, and A. Clements, Soares Magalhaes RJ. Gut microbiota disturbance during helminth infection: can it affect cognition and behaviour of children?, BMC Infect Dis, vol.17, p.58, 2017.

F. M. Ngure, B. M. Reid, J. H. Humphrey, M. N. Mbuya, G. Pelto et al., Water, sanitation, and hygiene (WASH), environmental enteropathy, nutrition, and early child development: making the links, Ann N Y Acad Sci, vol.1308, pp.118-146, 2014.