The international HapMap project, Nature, vol.426, p.14685227, 2003. ,
Genomes Project Consortium: An integrated map of genetic variation from 1,092 human genomes, Nature, vol.491, p.23128226, 2012. ,
Anthrax molecular epidemiology and forensics: using the appropriate marker for different evolutionary scales, Infect Genet Evol, vol.4, p.15450200, 2004. ,
Diverse Francisella tularensis strains and oropharyngeal tularemia, Turkey. Emerg Infect Dis, vol.21, p.25531237, 2015. ,
Insights to genetic characterization tools for epidemiological tracking of Francisella tularensis in Sweden, PLoS One, vol.9, p.25401326, 2014. ,
Population genomic and genomewide association studies of agroclimatic traits in sorghum, Proc Natl Acad Sci U S A, vol.110, p.23267105, 2013. ,
SNPs in ecological and conservation studies: a test in the Scandinavian wolf population, Mol Ecol, vol.14, p.15660941, 2005. ,
Genomic analysis identifies targets of convergent positive selection in drug-resistant Mycobacterium tuberculosis, Nat Genet, vol.45, p.23995135, 2013. ,
Evolution and single-nucleotide polymorphisms in methicillin-resistant Staphylococcus aureus strains with reduced susceptibility to vancomycin and daptomycin, based on determination of the complete genome, Antimicrob Agents Chemother, vol.59, p.25779584, 2015. ,
Humans and evolutionary and ecological forces shaped the phylogeography of recently emerged diseases, Nat Rev Microbiol, vol.7, pp.813-821, 2009. ,
Phylogeography and molecular epidemiology of Yersinia pestis in Madagascar, PLoS Negl Trop Dis, vol.5, p.21931876, 2011. ,
URL : https://hal.archives-ouvertes.fr/pasteur-00836603
Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity, Nat Genet, vol.42, p.21037571, 2010. ,
URL : https://hal.archives-ouvertes.fr/pasteur-00836130
Water as Source of Francisella tularensis Infection in Humans, Turkey. Emerg Infect Dis, vol.21, p.26583383, 2015. ,
Population genetics of Vibrio cholerae from Nepal in 2010: evidence on the origin of the Haitian outbreak, MBio, vol.2, p.21862630, 2011. ,
Affordable assays for genotyping single nucleotide polymorphisms in insects, Insect Mol Biol, vol.16, p.17488301, 2007. ,
SNP genotyping: technologies and biomedical applications, Annu Rev Biomed Eng, vol.9, p.17391067, 2007. ,
Enabling large-scale pharmacogenetic studies by high-throughput mutation detection and genotyping technologies, Clin Chem, vol.47, p.11159763, 2001. ,
High-throughput methods for SNP genotyping, Methods Mol Biol, vol.578, p.19768599, 2009. ,
TaqMan real-time PCR assays for single-nucleotide polymorphisms which identify Francisella tularensis and its subspecies and subpopulations, PLoS One, vol.9, p.25238067, 2014. ,
Melt analysis of mismatch amplification mutation assays (Melt-MAMA): a functional study of a cost-effective SNP genotyping assay in bacterial models, PLoS One, vol.7, p.22438886, 2012. ,
Real-time PCR assays of singlenucleotide polymorphisms defining the major Brucella clades, J Clin Microbiol, vol.46, p.18032628, 2008. ,
Allele-specific PCR in SNP genotyping, Methods Mol Biol, vol.578, pp.415-424, 2009. ,
Intraspecific diversity of Yersinia pestis, Clin Microbiol Rev, vol.17, p.15084509, 2004. ,
, Human plague: review of regional morbidity and mortality, WHO, pp.37-48, 2004.
Plague manual: epidemiology, distribution, surveillance and control, 2010. ,
Yersinia pestis-etiologic agent of plague, Clin Microbiol Rev, vol.10, p.8993858, 1997. ,
Understanding the persistence of plague foci in Madagascar, PLoS Negl Trop Dis, vol.7, p.24244760, 2013. ,
URL : https://hal.archives-ouvertes.fr/pasteur-00946701
Pneumonic plague outbreak, Emerg Infect Dis, vol.21, p.25530466, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-01300528
, Plague-Madagascar. Emergencies preparedness, response, World Health Organization, 2014.
Hot spots in a wired world: WHO surveillance of emerging and reemerging infectious diseases, Lancet Infect Dis, vol.1, p.11871807, 2001. ,
Febrile illness diagnostics and the malaria-industrial complex: a socioenvironmental perspective, BMC Infect Dis, vol.16, p.27855644, 2016. ,
Biosafety and Biosecurity: A Relative Risk-Based Framework for Safer, More Secure, and Sustainable Laboratory Capacity Building, Front Public Health, vol.3, p.26539427, 2015. ,
Experience establishing tuberculosis laboratory capacity in a developing country setting, Int J Tuberc Lung Dis, vol.14, pp.59-64, 2010. ,
Temporal phylogeography of Yersinia pestis in Madagascar: Insights into the long-term maintenance of plague, PLoS Negl Trop Dis, vol.11, p.28873412, 2017. ,
URL : https://hal.archives-ouvertes.fr/pasteur-01635032
A decade of plague in Mahajanga, Madagascar: insights into the global maritime spread of pandemic plague, MBio, vol.4, p.23404402, 2013. ,
Development and testing of a rapid diagnostic test for bubonic and pneumonic plague, Lancet, vol.361, pp.211-216, 2003. ,
Detection of Yersinia pestis by pesticin fluorogenic probe-coupled PCR, Mol Cell Probes, vol.14, p.10799272, 2000. ,
Heat-mediated activation of affinityimmobilized Taq DNA polymerase, Biotechniques, vol.22, p.9105627, 1997. ,
Pneumonic Plague Transmission, Emerg Infect Dis, vol.23, p.28221119, 2015. ,
URL : https://hal.archives-ouvertes.fr/pasteur-01653354
Yersinia pestis in Pulex irritans fleas during plague outbreak, Madagascar. Emerg Infect Dis, vol.20, p.25061697, 2014. ,
Diagnosis of bubonic plague by PCR in Madagascar under field conditions, J Clin Microbiol, vol.38, p.10618097, 2000. ,
Detection of Yersinia pestis using real-time PCR in patients with suspected bubonic plague, Mol Cell Probes, vol.25, p.20933595, 2011. ,
URL : https://hal.archives-ouvertes.fr/pasteur-00836493
Diverse Genotypes of Yersinia pestis Caused Plague in Madagascar in 2007, PLoS Negl Trop Dis, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01300547