, Variable host-pathogen compatibility in Mycobacterium tuberculosis, Proc. Natl. Acad. Sci. U. S. A, vol.103, pp.2869-2873
Application of sensitive and specific molecular methods to uncover global dissemination of the major RDRio sublineage of the Latin American-Mediterranean Mycobacterium tuberculosis spoligotype family, J. Clin. Microbiol, vol.46, pp.1259-1267, 2008. ,
URL : https://hal.archives-ouvertes.fr/pasteur-01375200
Stable association between strains of Mycobacterium tuberculosis and their human host populations, Proc. Natl. Acad. Sci. U. S. A, vol.101, pp.4871-4876, 2004. ,
Methodological and clinical aspects of the molecular epidemiology of Mycobacterium tuberculosis and other mycobacteria, Clin. Microbiol. Rev, vol.29, issue.2, pp.239-290, 2016. ,
URL : https://hal.archives-ouvertes.fr/pasteur-01305201
Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology, J. Clin. Microbiol, vol.35, pp.907-914, 1997. ,
Strain classification of Mycobacterium tuberculosis: congruence between large sequence polymorphisms and spoligotypes, Int. J. Tuberc. Lung Dis, vol.15, pp.131-133, 2011. ,
Analysis of Mycobacterium tuberculosis genotypic lineage distribution in Chile and neighboring countries, PLoS One, vol.11, 2016. ,
URL : https://hal.archives-ouvertes.fr/pasteur-01652105
Discovery of a novel Mycobacterium tuberculosis lineage that is a major cause of tuberculosis in Rio de Janeiro, Brazil, J. Clin. Microbiol, vol.45, pp.3891-3902, 2007. ,
Finer snapshot of circulating Mycobacterium tuberculosis genotypes in Guadeloupe, Martinique, and French Guiana, J. Clin. Microbiol, vol.49, pp.2685-2687, 2011. ,
URL : https://hal.archives-ouvertes.fr/pasteur-00691760
Genotypes of Mycobacterium tuberculosis in patients at risk of drug resistance in Bolivia, Infect. Genet. Evol, vol.17, pp.195-201, 2013. ,
Relation of Mycobacterium tuberculosis mutations at katG315 and inhA-15 with drug resistance profile, genetic background, and clustering in Argentina, Diagn. Microbiol. Infect. Dis, 2017. ,
Multidrug-resistant tuberculosis in AIDS patients at the beginning of the millennium, Medicina (Mex.), vol.66, pp.399-404, 2006. ,
Modelling the feasibility of bovine tuberculosis eradication in Argentina, Rev. Sci. Tech. Int. Off. Epizoot, vol.30, pp.635-643, 2011. ,
Evaluation of spoligotyping, SNPs and customised MIRU-VNTR combination for genotyping Mycobacterium tuberculosis clinical isolates in Madagascar, PLoS One, vol.12, 2017. ,
URL : https://hal.archives-ouvertes.fr/pasteur-01649998
Population structure among Mycobacterium tuberculosis isolates from pulmonary tuberculosis patients in Colombia, PLoS One, vol.9, 2014. ,
URL : https://hal.archives-ouvertes.fr/pasteur-01011076
IS-seq: a novel high throughput survey of in vivo IS6110 transposition in multiple Mycobacterium tuberculosis genomes, BMC Genomics, vol.13, p.249, 2012. ,
Mycobacterium tuberculosis strains of the Beijing genotype are rarely observed in tuberculosis patients in South America, Mem. Inst. Oswaldo Cruz, vol.103, pp.489-492, 2008. ,
HIV infection and geographically bound transmission of drug-resistant tuberculosis, Argentina. Emerg. Infect. Dis, vol.18, pp.1802-1810, 2012. ,
Mycobacterium tuberculosis phylogeny reconstruction based on combined numerical analysis with IS1081, IS6110, VNTR, and DR-based spoligotyping suggests the existence of two new phylogeographical clades, J. Mol. Evol, vol.53, pp.680-689, 2001. ,
Finer characterization of Mycobacterium tuberculosis using spoligotyping and 15-loci MIRU-VNTRs reveals phylogeographical specificities of isolates circulating in Guyana and Suriname, 2015. ,
URL : https://hal.archives-ouvertes.fr/pasteur-01153550
, Genetics and Evolution, vol.62, pp.1-7, 2018.
, Genet. Evol, vol.30, pp.114-119
Proposal for standardization of optimized mycobacterial interspersed repetitive unit-variable-number tandem repeat typing of Mycobacterium tuberculosis, J. Clin. Microbiol, vol.44, pp.4498-4510, 2006. ,
Fitness study of the RDRio lineage and Latin American-Mediterranean family of Mycobacterium tuberculosis in the city of Rio Grande, Brazil. FEMS Immunol. Med. Microbiol, vol.58, pp.119-127, 2010. ,
Distinct clinical and epidemiological features of tuberculosis in New York City caused by the RD(Rio) Mycobacterium tuberculosis sublineage, Infect. Genet. Evol, vol.12, pp.664-670, 2012. ,
, Guidelines for Surveillance of Drug Resistance in Tuberculosis, vol.422, 2009.
, Genetics and Evolution, vol.62, pp.1-7, 2018.
, Austral Africa=22.28, North America=10.9
, SIT2 (H2) 21 (2.6)
, South America=23.37, North America=17.62, Western Europe=9.7, Northern Europe=3.76, Eastern Europe=3.37, Central America=3.17, Southern Europe=2.97, North
, South America=54.55, Eastern Europe=7.27, Northern Asia=7.27, Western Europe=7.27, Southeastern Asia=7.27, Northern Europe=3.64, Western Asia=3.64, North America=3, p.64
, SIT4 (Unknown) 10 (1.2)
, Austral Africa=31.31, Southern Europe=19.19, South America=18.18, Western Europe=15.15, North America=6.06, West Indies=5.05
, SIT2541 (T1) 7 (0.9) AR=77.78