Changes in the microbial community of an arable soil caused by long-term metal contamination, Eur. J. Soil Sci, vol.56, pp.93-102, 2005. ,
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update, Nucleic Acids Res, vol.46, pp.537-544, 2018. ,
Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes, Nat. Biotechnol, vol.31, pp.533-538, 2013. ,
Trimmomatic: a flexible trimmer for Illumina sequence data, Bioinformatics, vol.30, pp.2114-2120, 2014. ,
Adsorption of heavy metal ions on soils and soils constituents, J. Colloid Interface Sci, vol.277, pp.1-18, 2004. ,
Nature and Properties of Soils, the: Pearson New International Edition, 2013. ,
Chlorpyrifos biodegradation and 3,5,6-trichloro-2-pyridinol production by actinobacteria isolated from soil, Int. Biodeterior. Biodegrad, vol.73, pp.1-7, 2012. ,
The versatile ?-proteobacteria: key players in sulphidic habitats, Nat. Rev. Microbiol, vol.4, pp.458-468, 2006. ,
Salinity and bacterial diversity: to what extent does the concentration of salt affect the bacterial community in a saline soil, PLoS One, vol.9, 2014. ,
Soil microbial activity and community composition: impact of changes in matric and osmotic potential, Soil Biol. Biochem, vol.43, pp.1229-1236, 2011. ,
Biosorption of lead from aqueous solutions by Bacillus strains possessing heavy-metal resistance, Chem. Eng. J, vol.173, pp.422-428, 2011. ,
Ecology -controlling eutrophication: nitrogen and phosphorus, Science, vol.80, pp.1014-1015, 2009. ,
Apparent soil electrical conductivity measurements in agriculture, Comput. Electron. Agric, vol.46, pp.11-43, 2005. ,
Toxicity of copper hydroxide nanoparticles, bulk copper hydroxide, and ionic copper to alfalfa plants: a spectroscopic and gene expression study, Environ. Pollut, vol.243, pp.703-712, 2018. ,
The metagenomics of soil, Nat. Rev. Microbiol, vol.3, pp.470-478, 2005. ,
Lead astray: scale, environmental justice and the El Paso smelter, Local Environ, vol.17, pp.797-814, 2012. ,
Changes in soil fertility parameters and the environmental effects in a rapidly developing region of China, Agric. Ecosyst. Environ, vol.129, pp.286-292, 2009. ,
Microbial degradation of petroleum hydrocarbon contaminants: an overview, Biotechnol. Res. Int, pp.1-13, 2011. ,
Heavy metal distribution and bioaccumulation in Chihuahuan Desert Rough Harvester ant (Pogonomyrmex rugosus) populations, Environ. Pollut, vol.158, pp.1281-1287, 2010. ,
The El Paso smelter 20 years later: residual impact on Mexican children, Environ. Res, vol.74, pp.11-16, 1997. ,
Genetic regulation of biological nitrogen fixation, Nat. Rev. Microbiol, vol.2, pp.621-631, 2004. ,
URL : https://hal.archives-ouvertes.fr/hal-01213169
Cultivation-dependent and-independent approaches for determining bacterial diversity in heavy-metal-contaminated soil, Appl. Environ. Microbiol, vol.69, pp.3223-3230, 2003. ,
Plant Functional Composition Influences Rates of Soil Carbon and Nitrogen Accumulation, pp.314-322, 2008. ,
Ability of Immobilized Cyanobacteria to Remove Metal Ions From Solution and Demonstration of the Presence of Metallothionein Genes in Various Strains, J. Hazard. Subst. Res, vol.1, pp.1-18, 1998. ,
Micronutrient availability in soils of Northwest Bosnia and Herzegovina in relation to silage maize production, Acta Agric. Scand. Sect. B Soil Plant Sci, vol.68, pp.301-310, 2018. ,
Significant acidification in major Chinese croplands, vol.327, pp.1008-1010, 2010. ,
Role of soil microorganisms in improving P nutrition of plants, Plant Soil, vol.245, pp.83-93, 2002. ,
Bioavailability of soil inorganic P in the rhizosphere as affected by root-induced chemical changes: a review, Plant Soil, vol.237, pp.173-195, 2001. ,
Shifts in microbial community structure along an ecological gradient of hypersaline soils and sediments, ISME J, vol.4, pp.829-838, 2010. ,
Massive dominance of Epsilonproteobacteria in formation waters from a Canadian oil sands reservoir containing severely biodegraded oil, Environ. Microbiol, vol.14, pp.387-404, 2012. ,
Evidence for autotrophic CO 2 fixation via the reductive tricarboxylic acid cycle by members of the ? subdivision of proteobacteria, Society, vol.187, pp.3020-3027, 2005. ,
Bacterial diversity in cucumber (Cucumis sativus) rhizosphere in response to salinity, soil pH, and boron, Soil Biol. Biochem, vol.42, pp.567-575, 2010. ,
Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes, Appl. Environ. Microbiol, vol.72, pp.1719-1728, 2006. ,
Metagenome-based metabolic reconstruction reveals the ecophysiological function of Epsilonproteobacteria in a hydrocarbon-contaminated sulfidic aquifer, Front. Microbiol, vol.6, pp.1-14, 2015. ,
Phosphorus solubilizing bacteria: occurrence, mechanisms and their role in crop production, J. Agric. Biol. Sci, vol.1, pp.48-58, 2009. ,
Phylogenetic diversity and ecophysiology of Candidate phylum Saccharibacteria in activated sludge, FEMS Microbiol. Ecol, vol.92, pp.1-11, 2016. ,
Sulfuricurvum kujiense gen. nov., sp. nov., a facultatively anaerobic, chemolithoautotrophic, sulfur-oxidizing bacterium isolated from an underground crude-oil storage cavity, Int. J. Syst. Evol. Microbiol, vol.54, pp.2297-2300, 2004. ,
Stabilization of As, Cr, Cu, Pb and Zn in soil using amendments -a review, Waste Manag, vol.28, pp.215-225, 2008. ,
Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale, Appl. Environ. Microbiol, vol.75, pp.5111-5120, 2009. ,
Soil Fertility and Biodiversity in Organic Farming Soil Fertility and Biodiversity in Organic Farming, Science, vol.80, pp.1694-1697, 2008. ,
Status of macro-and micronutrients in some soils of Tonk district of Rajasthan, J. Indian Soc. Soil Sci, vol.54, pp.508-512, 2006. ,
Exploring research frontiers in microbiology: the challenge of metagenomics in soil microbiology, Res. Microbiol, vol.161, pp.497-505, 2010. ,
Soil Guide -A Handbook for Understanding and Managing Agricultural Soils. Department of Agriculture and Food, 2004. ,
The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria, Environ. Microbiol, vol.10, pp.2966-2978, 2008. ,
Microbial heavy-metal resistance, J. Biotechnol, vol.51, pp.1623-1632, 1999. ,
Modulation of CuO nanoparticles toxicity to green pea (Pisum sativum Fabaceae) by the phytohormone indole-3-acetic acid, Sci. Total Environ, vol.598, pp.513-524, 2017. ,
The US-Mexican Border Environment: Integrated Approach to Defining Particulate Matter Issues in the Paso Del Norte Region, pp.131-171, 2005. ,
Simultaneous bioremediation of Cr(VI) and lindane in soil by actinobacteria, Int. Biodeterior. Biodegrad, vol.88, pp.48-55, 2014. ,
Assessment of arsenic and heavy metal concentrations in water and sediments of the Rio Grande at El PasoJuarez metroplex region, Environ. Int, vol.29, issue.03, pp.80-81, 2004. ,
Lead resistance in two bacterial isolates from heavy metal-contaminated soils, Microb. Ecol, vol.37, pp.218-224, 1999. ,
Robust hydrocarbon degradation and dynamics of bacterial communities during nutrient-enhanced oil spill bioremediation, Appl. Environ. Microbiol, vol.68, pp.5537-5548, 2002. ,
Cloning the metagenome: a strategy for accessing the genetic and functional diversity of uncultured microorganisms, Appl. Environ. Microbiol, vol.66, pp.2541-2547, 2000. ,
Assessment of five soil DNA extraction methods and a rapid laboratory-developed method for quality soil DNA extraction for 16S rDNA-based amplification and library construction, J. Microbiol, 2014. ,
, Environment International, vol.123, pp.558-566, 2019.
, Methods, vol.97, pp.68-73
Microbial performance in soils along a salinity gradient under acidic conditions, Appl. Soil Ecol, vol.23, pp.27-28, 2003. ,
Phosphorus dynamics: from soil to plant, Plant Physiol, vol.156, pp.997-1005, 2011. ,
Microbial degradation of organophosphorus compounds, FEMS Microbiol. Rev, vol.30, pp.428-471, 2006. ,
Abundance, composition, diversity and novelty of soil Proteobacteria, ISME J, vol.3, pp.992-1000, 2009. ,
Genetic diversity and characterization of heavy metal-resistant-endophytic bacteria from two copper-tolerant plant species on copper mine wasteland, Bioresour. Technol, vol.101, pp.501-509, 2010. ,
Microbial diversity and function in soil: from genes to ecosystems, Curr. Opin. Microbiol, vol.5, issue.02, pp.324-331, 2002. ,
The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems, Ecol. Lett, vol.11, pp.296-310, 2008. ,
Mechanisms of pollution induced community tolerance in a soil microbial community exposed to Cu, Environ. Pollut, vol.190, pp.1-9, 2014. ,
A single application of Cu to field soil has long-term effects on bacterial community structure, diversity, and soil processes, Pedobiologia (Jena), vol.53, pp.149-158, 2009. ,
Assessment of microbial activity and bacterial community composition in the rhizosphere of a copper accumulator and a non-accumulator, Soil Biol. Biochem, vol.40, pp.1167-1177, 2008. ,
Impact of salinity on soil microbial communities and the decomposition of maize in acidic soils, Geoderma, vol.137, pp.100-108, 2006. ,
Kraken: ultrafast metagenomic sequence classification using exact alignments, Genome Biol, vol.15, 2014. ,
DNA recovery from soils of diverse composition, Appl. Environ. Microbiol, vol.62, pp.316-322, 1996. ,
Significant accumulation of nitrate in Chinese semi-humid croplands, Nat. Publ. Group, 2016. ,