Permutational multivariate analysis of variance (PERMANOVA), Wiley StatsRef: Statistics Reference Online, pp.1-15, 2017. ,
A novel enzyme, citrylCoA lyase, catalysing the second step of the citrate cleavage reaction in Hydrogenobacter thermophilus TK-6, Mol. Microbiol, vol.52, pp.763-770, 2004. ,
Tax4Fun: Predicting functional profiles from metagenomic 16S rRNA data, Bioinformatics, vol.31, pp.2882-2884, 2015. ,
Importance of food-demand management for climate mitigation, Nat. Clim. Chang, vol.4, pp.924-929, 2014. ,
Gephi: an open source software for exploring and manipulating networks. Third Int, 2009. ,
Combined effects of reduced irrigation and water quality on the soil microbial community of a citrus orchard under semi-arid conditions, Soil Biol. Biochem, vol.104, pp.226-237, 2017. ,
An analysis of transformations, J. R. Stat. Soc. Ser. B, vol.26, pp.211-252, 1964. ,
Microbial interactions: ecology in a molecular perspective, Brazil. J. Microbiol, vol.47, pp.86-98, 2016. ,
Soil biodiversity for agricultural sustainability, Agric. Ecosyst. Environ, vol.121, pp.233-244, 2007. ,
QIIME allows analysis of highthroughput community sequencing data, Nat. Methods, vol.7, pp.335-336, 2010. ,
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample, Proc. Natl. Acad. Sci. U.S.A, vol.108, pp.4516-4522, 2011. ,
Irrigation and drainage management strategies to enhance cranberry production and optimize water use in North America, Can. J. Soil Sci, vol.91, 2017. ,
Root microbiota drive direct integration of phosphate stress and immunity, Nature, vol.543, pp.513-518, 2017. ,
Water management: current and future challenges and research directions, Water Resour. Res, vol.51, pp.4823-4839, 2015. ,
The igraph software package for complex network research, InterJ. Complex Sy, vol.1695, pp.1-9, 2006. ,
Yield, water use efficiency and nitrogen uptake in potato: influence of drought stress, Potato Res, vol.40, pp.19-34, 1997. ,
Global biogeography and quantitative seasonal dynamics of gemmatimonadetes in soil, Appl. Environ. Microbiol, vol.77, pp.6295-6300, 2011. ,
Water footprint scenarios for 2050: a global analysis, Environ. Int, vol.64, pp.71-82, 2014. ,
Microbial interactions: from networks to models, Nat. Rev. Microbiol, vol.10, pp.538-550, 2012. ,
Toward an ecological classification of soil bacteria, Ecology, vol.88, pp.1354-1364, 2007. ,
Répertoire de la Production de Semences Certifiées de Pommes de Terre, 2016. ,
Quality of irrigation water affects soil functionality and bacterial community stability in response to heat disturbance, Appl. Environ. Microbiol, vol.84, 2018. ,
Irrigation Water Requirement and Water Withdrawal by Country, 2012. ,
On water availability in saline soils, Aust. J. Soil Res, vol.42, pp.833-840, 2004. ,
A decade of irrigation transforms the soil microbiome of a semi-arid pine forest, Mol. Ecol, vol.26, pp.1190-1206, 2017. ,
Changes in crested wheatgrass root exudation caused by flood, drought, and nutrient stress, J. Environ. Qual, vol.36, p.904, 2007. ,
Revisiting life strategy concepts in environmental microbial ecology, FEMS Microbiol. Ecol, vol.93, pp.1-14, 2017. ,
Response and adaptation by plants to flooding stress, Ann. Bot, vol.96, pp.501-505, 2005. ,
Microbial diversity and ecological networks as indicators of environmental quality, Environ. Chem. Lett, vol.15, pp.265-281, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01516976
Air pollution below WHO levels decreases by 40 % the links of terrestrial microbial networks, Environ. Chem. Lett, vol.14, pp.467-475, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01516963
Principles of Soil and Plant Water Relations, 2005. ,
Open-source sequence clustering methods improve the state of the art, vol.1, p.3, 2016. ,
Sparse and compositionally robust inference of microbial ecological networks, PLoS Comput. Biol, vol.11, pp.1-25, 2015. ,
Matric potential-based irrigation management of field-grown strawberry: effects on yield and water use efficiency, Agri. Water Manag, vol.161, pp.102-113, 2015. ,
The DNA sequence of the sulfate activation locus from Escherichia coli K-12, J. Biol. Chem, vol.267, pp.10405-10410, 1992. ,
Microbial community diversities and taxa abundances in soils along a seven-year gradient of potato monoculture using high throughput pyrosequencing approach, PLoS ONE, vol.9, p.86610, 2014. ,
Network topology reveals high connectance levels and few key microbial genera within soils. Front, Environ. Sci, vol.2, pp.1-11, 2014. ,
The P/N (Positive-to-Negative Links) ratio in complex networksa promising in silico biomarker for detecting changes occurring in the human microbiome, Microb. Ecol, vol.75, pp.1063-1073, 2018. ,
Conversion of Amazon rainforest to agriculture alters community traits of methane-cycling organisms, Mol. Ecol, vol.26, pp.1547-1556, 2017. ,
Drought stress and root-associated bacterial communities, Front. Plant Sci, vol.8, pp.1-16, 2018. ,
The structure and function of complex networks, SIAM Rev, vol.45, pp.167-256, 2003. ,
Modularity and community structure in networks, Proc. Natl. Acad. Sci. U.S.A, vol.103, pp.8577-8582, 2006. ,
DOI : 10.1073/pnas.0601602103
URL : http://www.pnas.org/content/103/23/8577.full.pdf
Diversity of ammonia monooxygenase operon in autotrophic ammonia-oxidizing bacteria, Arch. Microbiol, vol.177, pp.139-149, 2002. ,
, Community Ecology Package, vol.2, 2013.
Crop diversity increases disease suppressive capacity of soil microbiomes, Ecosphere, vol.5, pp.1-39, 2018. ,
Sulfatereducing microorganisms in wetlands -fameless actors in carbon cycling and climate change, Front. Microbiol, vol.3, pp.1-19, 2012. ,
Relative contributions of archaea and bacteria to aerobic ammonia oxidation in the environment, Environ. Microbiol, vol.10, pp.2931-2941, 2008. ,
The SILVA ribosomal RNA gene database project: Improved data processing and web-based tools, Nucl. Acids Res, vol.41, pp.590-596, 2013. ,
DOI : 10.1093/nar/gks1219
URL : https://academic.oup.com/nar/article-pdf/41/D1/D590/3690367/gks1219.pdf
Wolbachia variant that induces two distinct reproductive phenotypes in different hosts, Heredity, vol.95, pp.389-393, 2005. ,
DOI : 10.1038/sj.hdy.6800737
URL : https://www.nature.com/articles/6800737.pdf
Methanol:coenzyme M methyltransferase from Methanosarcina barkeri -Substitution of the corrinoid harbouring subunit MtaC by free cob(I)alamin, Eur. J. Biochem, vol.261, pp.674-681, 1999. ,
The residue mass of L-pyrrolysine in three distinct methylamine methyltransferases, J. Biol. Chem, vol.280, pp.36962-36969, 2005. ,
, Soil Taxonomy. A Basic System of Soil Classification for Making and Interpreting Soil Surveys, 2nd Edn, Government Printing Office, 1999.
dry season constrains bacterial phylogenetic diversity in a semi-arid rhizosphere system, Microb. Ecol, vol.73, pp.153-161, 2017. ,
A communal catalogue reveals Earth's multiscale microbial diversity, Nature, vol.551, pp.457-463, 2017. ,
A closed-form equation for predicting the hydraulic conductivity of unsaturated soils, Appl. Environ. Microbiol, vol.61, p.892, 1980. ,
Bergey's Manual of Systematic Bacteriology, The Firmicutes, vol.3, 2009. ,
Effects of soil matric potential on potato growth under drip irrigation in the North China Plain, Agric. Water Manag, vol.88, pp.34-42, 2007. ,
Mapping the ecological networks of microbial communities, Nat. Commun, vol.8, p.2042, 2017. ,
Influence of water management on the active root-associated microbiota involved in arsenic, iron, and sulfur cycles in rice paddies, Appl. Microbiol. Biotechnol, vol.101, pp.6725-6738, 2017. ,