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Rapid metagenomic characterization of a case of imported COVID-19 in Cambodia

Abstract : Rapid production and publication of pathogen genome sequences during emerging disease outbreaks provide crucial public health information. In resource-limited settings, especially near an outbreak epicenter, conventional deep sequencing or bioinformatics are often challenging. Here we successfully used metagenomic next generation sequencing on an iSeq100 Illumina platform paired with an open-source bioinformatics pipeline to quickly characterize Cambodia's first case of COVID-2019.
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Preprints, Working Papers, ...
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https://hal-riip.archives-ouvertes.fr/pasteur-03221716
Contributor : Philippe Dussart Connect in order to contact the contributor
Submitted on : Sunday, May 9, 2021 - 5:00:00 PM
Last modification on : Tuesday, June 8, 2021 - 5:29:33 PM
Long-term archiving on: : Wednesday, August 11, 2021 - 9:34:39 AM

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Manning et al. - 2020 - Rapid ...
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Jessica E. Manning, Jennifer A. Bohl, Sreyngim Lay, Sophana Chea, Ly Sovann, et al.. Rapid metagenomic characterization of a case of imported COVID-19 in Cambodia. 2021. ⟨pasteur-03221716⟩

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