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Abstract : Rapid production and publication of pathogen genome sequences during emerging disease outbreaks provide crucial public health information. In resource-limited settings, especially near an outbreak epicenter, conventional deep sequencing or bioinformatics are often challenging. Here we successfully used metagenomic next generation sequencing on an iSeq100 Illumina platform paired with an open-source bioinformatics pipeline to quickly characterize Cambodia's first case of COVID-2019.
https://hal-riip.archives-ouvertes.fr/pasteur-03221716 Contributor : Philippe DussartConnect in order to contact the contributor Submitted on : Sunday, May 9, 2021 - 5:00:00 PM Last modification on : Tuesday, June 8, 2021 - 5:29:33 PM Long-term archiving on: : Wednesday, August 11, 2021 - 9:34:39 AM
Jessica E. Manning, Jennifer A. Bohl, Sreyngim Lay, Sophana Chea, Ly Sovann, et al.. Rapid metagenomic characterization of a case of imported COVID-19 in Cambodia. 2021. ⟨pasteur-03221716⟩