Skip to Main content Skip to Navigation
Preprints, Working Papers, ...

Rapid metagenomic characterization of a case of imported COVID-19 in Cambodia

Abstract : Rapid production and publication of pathogen genome sequences during emerging disease outbreaks provide crucial public health information. In resource-limited settings, especially near an outbreak epicenter, conventional deep sequencing or bioinformatics are often challenging. Here we successfully used metagenomic next generation sequencing on an iSeq100 Illumina platform paired with an open-source bioinformatics pipeline to quickly characterize Cambodia's first case of COVID-2019.
Document type :
Preprints, Working Papers, ...
Complete list of metadata

https://hal-riip.archives-ouvertes.fr/pasteur-03221716
Contributor : Philippe Dussart <>
Submitted on : Sunday, May 9, 2021 - 5:00:00 PM
Last modification on : Tuesday, June 8, 2021 - 5:29:33 PM
Long-term archiving on: : Wednesday, August 11, 2021 - 9:34:39 AM

File

Manning et al. - 2020 - Rapid ...
Files produced by the author(s)

Licence


Copyright

Identifiers

Collections

Citation

Jessica Manning, Jennifer Bohl, Sreyngim Lay, Sophana Chea, Ly Sovann, et al.. Rapid metagenomic characterization of a case of imported COVID-19 in Cambodia. 2021. ⟨pasteur-03221716⟩

Share

Metrics

Record views

28

Files downloads

53